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Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00004150m |
Family | GT47 |
Protein Properties | Length: 429 Molecular Weight: 47650.1 Isoelectric Point: 8.0181 |
Chromosome | Chromosome/Scaffold: 038851 Start: 3960 End: 6521 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 60 | 349 | 1.9e-34 |
TDARLLEPLFHHRVLEQGCLADDPTHAHAVFVPYNAALDTLPYVLNTELLDLDLDASAQHGVELAEFLARDQPWILARRRGHDHFLVVSGSGSRATGSDR FTGQFDRFTGRFDRFEFKSKFKSSRATDLPAGLTGLPTGLPVYRPPPSADPRMWGTTSLLRLPDLANFTFLTLESRIWPWQEHAIAHLTSFHPASLPHLH AWLAPARRSRRGTLMVFTGGVSRPSRPNIRGSILAECENCTDACAVEMFCLEPPGDTPTRRSTFDAILAGCVPMFFEDLAARSQYGWHLP |
Full Sequence |
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Protein Sequence Length: 429 Download |
VAGDHRGGTV GPDLLRHCDA DAFPLADASA TATSTPPCES LANHGLSLRT HPRSRSRYCT 60 DARLLEPLFH HRVLEQGCLA DDPTHAHAVF VPYNAALDTL PYVLNTELLD LDLDASAQHG 120 VELAEFLARD QPWILARRRG HDHFLVVSGS GSRATGSDRF TGQFDRFTGR FDRFEFKSKF 180 KSSRATDLPA GLTGLPTGLP VYRPPPSADP RMWGTTSLLR LPDLANFTFL TLESRIWPWQ 240 EHAIAHLTSF HPASLPHLHA WLAPARRSRR GTLMVFTGGV SRPSRPNIRG SILAECENCT 300 DACAVEMFCL EPPGDTPTRR STFDAILAGC VPMFFEDLAA RSQYGWHLPP RGLTSSRIAE 360 TLEARLEAVP EAEVRSMRRR VLEMVVTVVY WWTGRTGELR GVVKDAVDLA MDGVLRRTRR 420 RTRAQELY* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 2.0e-21 | 213 | 349 | 165 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAG13471.2 | 0 | 14 | 415 | 50 | 435 | AC026758_8 hypothetical protein [Oryza sativa Japonica Group] |
GenBank | ACN36955.1 | 0 | 13 | 426 | 46 | 438 | unknown [Zea mays] |
RefSeq | NP_001065337.1 | 0 | 14 | 415 | 189 | 574 | Os10g0553600 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002466037.1 | 0 | 22 | 426 | 76 | 465 | hypothetical protein SORBIDRAFT_01g050380 [Sorghum bicolor] |
RefSeq | XP_002467522.1 | 0 | 13 | 426 | 41 | 433 | hypothetical protein SORBIDRAFT_01g029520 [Sorghum bicolor] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DR819499 | 293 | 13 | 305 | 0 |
CO530238 | 281 | 13 | 293 | 0 |
AL506055 | 276 | 14 | 289 | 0 |
EB165943 | 278 | 13 | 290 | 0 |
DR786363 | 281 | 13 | 293 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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