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Basic Information | |
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Species | Sorghum bicolor |
Cazyme ID | Sb06g026020.1 |
Family | GT47 |
Protein Properties | Length: 480 Molecular Weight: 52704.8 Isoelectric Point: 9.0187 |
Chromosome | Chromosome/Scaffold: 6 Start: 55102938 End: 55104377 |
Description | glycosyltransferase 18 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 72 | 409 | 0 |
CGGGLVYVYDLPAAFNEDLLGMCDALAPMYSLCPYLANDGLGFPAGGTNLSSLLPQQLLGSWYASDQFALEHIVHRRLLSHRCRTTDPARAAAFFVPFYA GLAVGRHLWAANATGADRDRDCVALLSWLHAQPWYRRSHGWDHFIALGRITWDFRRTTGAGWGSGFLTMPGVANVTRLVIERDPWDGMDVGIPYPTGFHP LTAADVCAWQRYVARRPRPRLFAFAGAPRSAIKGDFRALLLEECQAAGDAACGALDCAEGRCIKNNALVMELFMGARFCLQPRGDSFTRRSLFDCLVAGA VPVLFWRRSAYEQYGWYLPVDGREAEWSVFIDRDQLRA |
Full Sequence |
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Protein Sequence Length: 480 Download |
MALVRPEHPN PAARRPRLVV LLLLAFFALQ LLVFLAFRAV RPPPATASAA AAAAVPVLAS 60 APTRRDENDS SCGGGLVYVY DLPAAFNEDL LGMCDALAPM YSLCPYLAND GLGFPAGGTN 120 LSSLLPQQLL GSWYASDQFA LEHIVHRRLL SHRCRTTDPA RAAAFFVPFY AGLAVGRHLW 180 AANATGADRD RDCVALLSWL HAQPWYRRSH GWDHFIALGR ITWDFRRTTG AGWGSGFLTM 240 PGVANVTRLV IERDPWDGMD VGIPYPTGFH PLTAADVCAW QRYVARRPRP RLFAFAGAPR 300 SAIKGDFRAL LLEECQAAGD AACGALDCAE GRCIKNNALV MELFMGARFC LQPRGDSFTR 360 RSLFDCLVAG AVPVLFWRRS AYEQYGWYLP VDGREAEWSV FIDRDQLRAG NLTVRGVLAA 420 IPDSRVRLMR KRVVKMIPGL VYAAADGEGL GGGMKDAVDV MVDGMLRRVA EQRPRWRTT* 480 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 2.0e-48 | 71 | 421 | 362 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN35419.1 | 0 | 1 | 479 | 1 | 476 | unknown [Zea mays] |
EMBL | CAD41668.3 | 0 | 3 | 479 | 1 | 471 | OSJNBa0019K04.15 [Oryza sativa (japonica cultivar-group)] |
GenBank | EAY95237.1 | 0 | 3 | 479 | 1 | 471 | hypothetical protein OsI_17054 [Oryza sativa Indica Group] |
RefSeq | NP_001053616.1 | 0 | 2 | 479 | 3 | 474 | Os04g0574100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002446968.1 | 0 | 1 | 479 | 1 | 479 | hypothetical protein SORBIDRAFT_06g026020 [Sorghum bicolor] |