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Genome Details

Selected Rep_genome_ID: HRGMv2_3897
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
HRGMv2_3897 4,104,077 97.54% 4.584% UK Europe HRGM
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_3897_CGC20 CGCFAM_00001 Yes 5 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_3897_CGC24 CGCFAM_00001 Yes 5 2 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_3897_CGC49 CGCFAM_00001 Yes 3 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_3897_CGC48 CGCFAM_00017 Yes 11 3 fructan
HRGMv2_3897_CGC45 CGCFAM_00023 Yes 6 2
HRGMv2_3897_CGC4 CGCFAM_00025 Yes 13 6 pectin/alpha-glucan
HRGMv2_3897_CGC52 CGCFAM_00059 Yes 9 2
HRGMv2_3897_CGC17 CGCFAM_00082 Yes 6 2 beta-mannan
HRGMv2_3897_CGC55 CGCFAM_00083 Yes 4 1 beta-glucan
HRGMv2_3897_CGC26 CGCFAM_00108 Yes 16 7 pectin
HRGMv2_3897_CGC5 CGCFAM_00217 Yes 18 8
HRGMv2_3897_CGC30 CGCFAM_00296 Yes 7 4
HRGMv2_3897_CGC39 CGCFAM_00304 Yes 8 1
HRGMv2_3897_CGC36 CGCFAM_00358 Yes 3 1
HRGMv2_3897_CGC32 CGCFAM_00444 Yes 7 3
HRGMv2_3897_CGC21 CGCFAM_00535 Yes 11 7 galactan/host glycan
HRGMv2_3897_CGC53 CGCFAM_00630 Yes 4 1
HRGMv2_3897_CGC16 CGCFAM_01225 Yes 6 1
HRGMv2_3897_CGC37 CGCFAM_01303 Yes 4 1
HRGMv2_3897_CGC27 CGCFAM_01542 Yes 7 3
HRGMv2_3897_CGC13 CGCFAM_01797 Yes 6 1
HRGMv2_3897_CGC2 CGCFAM_01806 Yes 7 5
HRGMv2_3897_CGC42 CGCFAM_02066 Yes 3 1
HRGMv2_3897_CGC10 CGCFAM_02545 Yes 7 1
HRGMv2_3897_CGC50 CGCFAM_02546 Yes 4 1
Top CAZyme Families