Cluster: HRGMv2_3897_CGC17
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate: beta-mannan
- Genome ID: HRGMv2_3897
- CGC Family ID: CGCFAM_00082
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3897_4 | HRGMv2_3897_4_133 | 180622 | 181542 | + | GH16_3 |
| TC | HRGMv2_3897_4 | HRGMv2_3897_4_134 | 181571 | 183928 | + | 1.B.14.6.2 |
| NULL(UNKNOWN) | HRGMv2_3897_4 | HRGMv2_3897_4_135 | 183974 | 184762 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3897_4 | HRGMv2_3897_4_136 | 184835 | 186490 | + | 8.A.46.2.2 |
| NULL(UNKNOWN) | HRGMv2_3897_4 | HRGMv2_3897_4_137 | 186529 | 187824 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3897_4 | HRGMv2_3897_4_138 | 187854 | 190193 | + | GH3 |
Gene ID: HRGMv2_3897_4_133
Type: CAZyme
Location: 180622 - 181542 (+)
Type: CAZyme
Location: 180622 - 181542 (+)
Gene ID: HRGMv2_3897_4_134
Type: TC
Location: 181571 - 183928 (+)
Type: TC
Location: 181571 - 183928 (+)
Gene ID: HRGMv2_3897_4_135
Type:
Location: 183974 - 184762 (+)
Type:
Location: 183974 - 184762 (+)
Gene ID: HRGMv2_3897_4_136
Type: TC
Location: 184835 - 186490 (+)
Type: TC
Location: 184835 - 186490 (+)
Gene ID: HRGMv2_3897_4_137
Type:
Location: 186529 - 187824 (+)
Type:
Location: 186529 - 187824 (+)
Gene ID: HRGMv2_3897_4_138
Type: CAZyme
Location: 187854 - 190193 (+)
Type: CAZyme
Location: 187854 - 190193 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.