Cluster: HRGMv2_3897_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3897
- CGC Family ID: CGCFAM_01225
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3897_4 | HRGMv2_3897_4_107 | 147266 | 148162 | - | 2.A.115.1.2 |
| pfam | HRGMv2_3897_4 | HRGMv2_3897_4_108 | 148179 | 151013 | - | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1_2 |
| TC | HRGMv2_3897_4 | HRGMv2_3897_4_109 | 151297 | 154299 | + | 1.B.14.6.1 |
| pfam | HRGMv2_3897_4 | HRGMv2_3897_4_110 | 154345 | 155970 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | HRGMv2_3897_4 | HRGMv2_3897_4_111 | 156200 | 157726 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3897_4 | HRGMv2_3897_4_112 | 157902 | 160337 | - | GH2 |
Gene ID: HRGMv2_3897_4_107
Type: TC
Location: 147266 - 148162 (-)
Type: TC
Location: 147266 - 148162 (-)
Gene ID: HRGMv2_3897_4_108
Type: pfam
Location: 148179 - 151013 (-)
Type: pfam
Location: 148179 - 151013 (-)
Gene ID: HRGMv2_3897_4_109
Type: TC
Location: 151297 - 154299 (+)
Type: TC
Location: 151297 - 154299 (+)
Gene ID: HRGMv2_3897_4_110
Type: pfam
Location: 154345 - 155970 (+)
Type: pfam
Location: 154345 - 155970 (+)
Gene ID: HRGMv2_3897_4_111
Type:
Location: 156200 - 157726 (+)
Type:
Location: 156200 - 157726 (+)
Gene ID: HRGMv2_3897_4_112
Type: CAZyme
Location: 157902 - 160337 (-)
Type: CAZyme
Location: 157902 - 160337 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.