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Cluster: HRGMv2_3897_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3897_20 HRGMv2_3897_20_41 46445 46855 + 9.B.35.1.2
TC HRGMv2_3897_20 HRGMv2_3897_20_42 47320 48693 + 2.A.66.1.28
TC HRGMv2_3897_20 HRGMv2_3897_20_43 48810 50141 + 3.A.5.1.1
pfam HRGMv2_3897_20 HRGMv2_3897_20_44 50494 51711 + DUF4934 | DUF5128
NULL(UNKNOWN) HRGMv2_3897_20 HRGMv2_3897_20_45 51713 53473 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3897_20 HRGMv2_3897_20_46 53464 54633 - GH171
STP HRGMv2_3897_20 HRGMv2_3897_20_47 54735 55271 + HD
TC HRGMv2_3897_20 HRGMv2_3897_20_48 55325 58156 + 1.B.42.1.8
Gene ID: HRGMv2_3897_20_41
Type: TC
Location: 46445 - 46855 (+)
Gene ID: HRGMv2_3897_20_42
Type: TC
Location: 47320 - 48693 (+)
Gene ID: HRGMv2_3897_20_43
Type: TC
Location: 48810 - 50141 (+)
Gene ID: HRGMv2_3897_20_44
Type: pfam
Location: 50494 - 51711 (+)
Gene ID: HRGMv2_3897_20_45
Type:
Location: 51713 - 53473 (+)
Gene ID: HRGMv2_3897_20_46
Type: CAZyme
Location: 53464 - 54633 (-)
Gene ID: HRGMv2_3897_20_47
Type: STP
Location: 54735 - 55271 (+)
Gene ID: HRGMv2_3897_20_48
Type: TC
Location: 55325 - 58156 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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