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Cluster: HRGMv2_3897_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3897_2 HRGMv2_3897_2_184 235567 237120 + 3.B.1.1.2
pfam HRGMv2_3897_2 HRGMv2_3897_2_185 237141 238073 + LTD | OAD_gamma
TC HRGMv2_3897_2 HRGMv2_3897_2_186 238098 238526 + 3.B.1.1.5
TC HRGMv2_3897_2 HRGMv2_3897_2_187 238528 239688 + 3.B.1.1.2
pfam HRGMv2_3897_2 HRGMv2_3897_2_188 240067 240318 + Cyc-maltodext_C
CAZyme HRGMv2_3897_2 HRGMv2_3897_2_189 240585 241421 - CE1
TC HRGMv2_3897_2 HRGMv2_3897_2_190 241553 242746 + 2.A.1.36.3
Gene ID: HRGMv2_3897_2_184
Type: TC
Location: 235567 - 237120 (+)
Gene ID: HRGMv2_3897_2_185
Type: pfam
Location: 237141 - 238073 (+)
Gene ID: HRGMv2_3897_2_186
Type: TC
Location: 238098 - 238526 (+)
Gene ID: HRGMv2_3897_2_187
Type: TC
Location: 238528 - 239688 (+)
Gene ID: HRGMv2_3897_2_188
Type: pfam
Location: 240067 - 240318 (+)
Gene ID: HRGMv2_3897_2_189
Type: CAZyme
Location: 240585 - 241421 (-)
Gene ID: HRGMv2_3897_2_190
Type: TC
Location: 241553 - 242746 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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