dbCAN Logo

Cluster: HRGMv2_3897_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3897_6 HRGMv2_3897_6_18 28217 31396 + 1.B.14.6.1
pfam HRGMv2_3897_6 HRGMv2_3897_6_19 31400 33319 + SusD_RagB | SusD-like_3
pfam HRGMv2_3897_6 HRGMv2_3897_6_20 33349 34575 + DUF4959 | DUF5000 | DUF5126
CAZyme HRGMv2_3897_6 HRGMv2_3897_6_21 34593 35690 + CBM32
CAZyme HRGMv2_3897_6 HRGMv2_3897_6_22 36225 38621 + GH95
CAZyme HRGMv2_3897_6 HRGMv2_3897_6_23 38863 40854 + GH51_2
TF HRGMv2_3897_6 HRGMv2_3897_6_24 40823 41704 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_3897_6 HRGMv2_3897_6_25 41992 44769 + GH2
CAZyme HRGMv2_3897_6 HRGMv2_3897_6_26 44840 46231 + CE20
CAZyme HRGMv2_3897_6 HRGMv2_3897_6_27 46228 48492 + CBM67 | GH78
CAZyme HRGMv2_3897_6 HRGMv2_3897_6_28 48615 50810 + GH42
Gene ID: HRGMv2_3897_6_18
Type: TC
Location: 28217 - 31396 (+)
Gene ID: HRGMv2_3897_6_19
Type: pfam
Location: 31400 - 33319 (+)
Gene ID: HRGMv2_3897_6_20
Type: pfam
Location: 33349 - 34575 (+)
Gene ID: HRGMv2_3897_6_21
Type: CAZyme
Location: 34593 - 35690 (+)
Gene ID: HRGMv2_3897_6_22
Type: CAZyme
Location: 36225 - 38621 (+)
Gene ID: HRGMv2_3897_6_23
Type: CAZyme
Location: 38863 - 40854 (+)
Gene ID: HRGMv2_3897_6_24
Type: TF
Location: 40823 - 41704 (-)
Gene ID: HRGMv2_3897_6_25
Type: CAZyme
Location: 41992 - 44769 (+)
Gene ID: HRGMv2_3897_6_26
Type: CAZyme
Location: 44840 - 46231 (+)
Gene ID: HRGMv2_3897_6_27
Type: CAZyme
Location: 46228 - 48492 (+)
Gene ID: HRGMv2_3897_6_28
Type: CAZyme
Location: 48615 - 50810 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List