Cluster: HRGMv2_3897_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate: pectin/alpha-glucan
- Genome ID: HRGMv2_3897
- CGC Family ID: CGCFAM_00025
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3897_1 | HRGMv2_3897_1_134 | 183057 | 185276 | - | GH133 |
| pfam | HRGMv2_3897_1 | HRGMv2_3897_1_135 | 185888 | 186142 | + | Ribosomal_S20p |
| STP | HRGMv2_3897_1 | HRGMv2_3897_1_136 | 186454 | 188415 | + | HATPase_c |
| CAZyme | HRGMv2_3897_1 | HRGMv2_3897_1_137 | 188728 | 191406 | + | GH77 |
| TC | HRGMv2_3897_1 | HRGMv2_3897_1_138 | 191743 | 193098 | - | 2.A.2.6.2 |
| pfam | HRGMv2_3897_1 | HRGMv2_3897_1_139 | 193127 | 194722 | - | DUF6377 |
| CAZyme | HRGMv2_3897_1 | HRGMv2_3897_1_140 | 195029 | 196861 | + | GH13_46 |
| CAZyme | HRGMv2_3897_1 | HRGMv2_3897_1_141 | 197065 | 199245 | + | GH97 |
| TC | HRGMv2_3897_1 | HRGMv2_3897_1_142 | 199430 | 202513 | + | 1.B.14.6.1 |
| TC | HRGMv2_3897_1 | HRGMv2_3897_1_143 | 202529 | 204157 | + | 8.A.46.1.1 |
| pfam | HRGMv2_3897_1 | HRGMv2_3897_1_144 | 204181 | 205290 | + | SusE |
| CAZyme | HRGMv2_3897_1 | HRGMv2_3897_1_145 | 205388 | 207751 | + | GH13_10 |
| CAZyme | HRGMv2_3897_1 | HRGMv2_3897_1_146 | 207774 | 209774 | + | GH13_14 |
Gene ID: HRGMv2_3897_1_134
Type: CAZyme
Location: 183057 - 185276 (-)
Type: CAZyme
Location: 183057 - 185276 (-)
Gene ID: HRGMv2_3897_1_135
Type: pfam
Location: 185888 - 186142 (+)
Type: pfam
Location: 185888 - 186142 (+)
Gene ID: HRGMv2_3897_1_136
Type: STP
Location: 186454 - 188415 (+)
Type: STP
Location: 186454 - 188415 (+)
Gene ID: HRGMv2_3897_1_137
Type: CAZyme
Location: 188728 - 191406 (+)
Type: CAZyme
Location: 188728 - 191406 (+)
Gene ID: HRGMv2_3897_1_138
Type: TC
Location: 191743 - 193098 (-)
Type: TC
Location: 191743 - 193098 (-)
Gene ID: HRGMv2_3897_1_139
Type: pfam
Location: 193127 - 194722 (-)
Type: pfam
Location: 193127 - 194722 (-)
Gene ID: HRGMv2_3897_1_140
Type: CAZyme
Location: 195029 - 196861 (+)
Type: CAZyme
Location: 195029 - 196861 (+)
Gene ID: HRGMv2_3897_1_141
Type: CAZyme
Location: 197065 - 199245 (+)
Type: CAZyme
Location: 197065 - 199245 (+)
Gene ID: HRGMv2_3897_1_142
Type: TC
Location: 199430 - 202513 (+)
Type: TC
Location: 199430 - 202513 (+)
Gene ID: HRGMv2_3897_1_143
Type: TC
Location: 202529 - 204157 (+)
Type: TC
Location: 202529 - 204157 (+)
Gene ID: HRGMv2_3897_1_144
Type: pfam
Location: 204181 - 205290 (+)
Type: pfam
Location: 204181 - 205290 (+)
Gene ID: HRGMv2_3897_1_145
Type: CAZyme
Location: 205388 - 207751 (+)
Type: CAZyme
Location: 205388 - 207751 (+)
Gene ID: HRGMv2_3897_1_146
Type: CAZyme
Location: 207774 - 209774 (+)
Type: CAZyme
Location: 207774 - 209774 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.