Cluster: HRGMv2_3897_CGC26
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate: pectin
- Genome ID: HRGMv2_3897
- CGC Family ID: CGCFAM_00108
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3897_9 | HRGMv2_3897_9_50 | 64501 | 68355 | + | GH31_18 |
| CAZyme | HRGMv2_3897_9 | HRGMv2_3897_9_51 | 68470 | 70422 | - | GH97 |
| CAZyme | HRGMv2_3897_9 | HRGMv2_3897_9_52 | 70686 | 71696 | - | GH43_5 |
| CAZyme | HRGMv2_3897_9 | HRGMv2_3897_9_53 | 71763 | 73661 | - | GH43_4 |
| NULL(UNKNOWN) | HRGMv2_3897_9 | HRGMv2_3897_9_54 | 73758 | 75536 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3897_9 | HRGMv2_3897_9_55 | 75621 | 77372 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3897_9 | HRGMv2_3897_9_56 | 77410 | 80619 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | HRGMv2_3897_9 | HRGMv2_3897_9_57 | 80853 | 80990 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_3897_9 | HRGMv2_3897_9_58 | 81150 | 85472 | - | HTH_AraC |
| CAZyme | HRGMv2_3897_9 | HRGMv2_3897_9_59 | 85648 | 86643 | + | GH43_29 |
| CAZyme | HRGMv2_3897_9 | HRGMv2_3897_9_60 | 86807 | 88786 | + | GH51_2 |
| CAZyme | HRGMv2_3897_9 | HRGMv2_3897_9_61 | 88838 | 90373 | + | GH51_1 |
| pfam | HRGMv2_3897_9 | HRGMv2_3897_9_62 | 90523 | 91761 | - | Acyl_transf_3 |
| TC | HRGMv2_3897_9 | HRGMv2_3897_9_63 | 92333 | 93715 | - | 2.A.6.2.23 |
| TC | HRGMv2_3897_9 | HRGMv2_3897_9_64 | 93871 | 97062 | - | 2.A.6.2.22 |
| TC | HRGMv2_3897_9 | HRGMv2_3897_9_65 | 97148 | 98221 | - | 8.A.1.6.1 |
Gene ID: HRGMv2_3897_9_50
Type: CAZyme
Location: 64501 - 68355 (+)
Type: CAZyme
Location: 64501 - 68355 (+)
Gene ID: HRGMv2_3897_9_51
Type: CAZyme
Location: 68470 - 70422 (-)
Type: CAZyme
Location: 68470 - 70422 (-)
Gene ID: HRGMv2_3897_9_52
Type: CAZyme
Location: 70686 - 71696 (-)
Type: CAZyme
Location: 70686 - 71696 (-)
Gene ID: HRGMv2_3897_9_53
Type: CAZyme
Location: 71763 - 73661 (-)
Type: CAZyme
Location: 71763 - 73661 (-)
Gene ID: HRGMv2_3897_9_54
Type:
Location: 73758 - 75536 (-)
Type:
Location: 73758 - 75536 (-)
Gene ID: HRGMv2_3897_9_55
Type: pfam
Location: 75621 - 77372 (-)
Type: pfam
Location: 75621 - 77372 (-)
Gene ID: HRGMv2_3897_9_56
Type: TC
Location: 77410 - 80619 (-)
Type: TC
Location: 77410 - 80619 (-)
Gene ID: HRGMv2_3897_9_57
Type:
Location: 80853 - 80990 (-)
Type:
Location: 80853 - 80990 (-)
Gene ID: HRGMv2_3897_9_58
Type: TF
Location: 81150 - 85472 (-)
Type: TF
Location: 81150 - 85472 (-)
Gene ID: HRGMv2_3897_9_59
Type: CAZyme
Location: 85648 - 86643 (+)
Type: CAZyme
Location: 85648 - 86643 (+)
Gene ID: HRGMv2_3897_9_60
Type: CAZyme
Location: 86807 - 88786 (+)
Type: CAZyme
Location: 86807 - 88786 (+)
Gene ID: HRGMv2_3897_9_61
Type: CAZyme
Location: 88838 - 90373 (+)
Type: CAZyme
Location: 88838 - 90373 (+)
Gene ID: HRGMv2_3897_9_62
Type: pfam
Location: 90523 - 91761 (-)
Type: pfam
Location: 90523 - 91761 (-)
Gene ID: HRGMv2_3897_9_63
Type: TC
Location: 92333 - 93715 (-)
Type: TC
Location: 92333 - 93715 (-)
Gene ID: HRGMv2_3897_9_64
Type: TC
Location: 93871 - 97062 (-)
Type: TC
Location: 93871 - 97062 (-)
Gene ID: HRGMv2_3897_9_65
Type: TC
Location: 97148 - 98221 (-)
Type: TC
Location: 97148 - 98221 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.