Cluster: HRGMv2_3897_CGC32
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3897
- CGC Family ID: CGCFAM_00444
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3897_12 | HRGMv2_3897_12_29 | 47324 | 48835 | - | GH20 |
| CAZyme | HRGMv2_3897_12 | HRGMv2_3897_12_30 | 48898 | 51396 | - | GH89 |
| sulfatase | HRGMv2_3897_12 | HRGMv2_3897_12_31 | 51589 | 53118 | - | S1_16 |
| NULL(UNKNOWN) | HRGMv2_3897_12 | HRGMv2_3897_12_32 | 53293 | 55671 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3897_12 | HRGMv2_3897_12_33 | 55901 | 57970 | - | PL27 |
| pfam | HRGMv2_3897_12 | HRGMv2_3897_12_34 | 58264 | 59454 | - | SusD-like_3 |
| TC | HRGMv2_3897_12 | HRGMv2_3897_12_35 | 59466 | 62861 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_3897_12_29
Type: CAZyme
Location: 47324 - 48835 (-)
Type: CAZyme
Location: 47324 - 48835 (-)
Gene ID: HRGMv2_3897_12_30
Type: CAZyme
Location: 48898 - 51396 (-)
Type: CAZyme
Location: 48898 - 51396 (-)
Gene ID: HRGMv2_3897_12_31
Type: sulfatase
Location: 51589 - 53118 (-)
Type: sulfatase
Location: 51589 - 53118 (-)
Gene ID: HRGMv2_3897_12_32
Type:
Location: 53293 - 55671 (-)
Type:
Location: 53293 - 55671 (-)
Gene ID: HRGMv2_3897_12_33
Type: CAZyme
Location: 55901 - 57970 (-)
Type: CAZyme
Location: 55901 - 57970 (-)
Gene ID: HRGMv2_3897_12_34
Type: pfam
Location: 58264 - 59454 (-)
Type: pfam
Location: 58264 - 59454 (-)
Gene ID: HRGMv2_3897_12_35
Type: TC
Location: 59466 - 62861 (-)
Type: TC
Location: 59466 - 62861 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.