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Cluster: HRGMv2_3897_CGC52

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3897_32 HRGMv2_3897_32_12 8986 11058 + 1.B.14.15.2
STP HRGMv2_3897_32 HRGMv2_3897_32_13 11227 12078 + SBP_bac_3
CAZyme HRGMv2_3897_32 HRGMv2_3897_32_14 12243 13232 + GH179
pfam HRGMv2_3897_32 HRGMv2_3897_32_15 13320 14396 + DUF4421
TC HRGMv2_3897_32 HRGMv2_3897_32_16 14597 16222 - 1.B.9.4.2
NULL(UNKNOWN) HRGMv2_3897_32 HRGMv2_3897_32_17 16329 17609 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3897_32 HRGMv2_3897_32_18 17829 18674 + PCMT | Cons_hypoth95 | MTS | PrmA | Methyltransf_11 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
TC HRGMv2_3897_32 HRGMv2_3897_32_19 18968 19339 - 9.B.55.1.2
CAZyme HRGMv2_3897_32 HRGMv2_3897_32_20 19409 20428 - GH25
Gene ID: HRGMv2_3897_32_12
Type: TC
Location: 8986 - 11058 (+)
Gene ID: HRGMv2_3897_32_13
Type: STP
Location: 11227 - 12078 (+)
Gene ID: HRGMv2_3897_32_14
Type: CAZyme
Location: 12243 - 13232 (+)
Gene ID: HRGMv2_3897_32_15
Type: pfam
Location: 13320 - 14396 (+)
Gene ID: HRGMv2_3897_32_16
Type: TC
Location: 14597 - 16222 (-)
Gene ID: HRGMv2_3897_32_17
Type:
Location: 16329 - 17609 (-)
Gene ID: HRGMv2_3897_32_18
Type: pfam
Location: 17829 - 18674 (+)
Gene ID: HRGMv2_3897_32_19
Type: TC
Location: 18968 - 19339 (-)
Gene ID: HRGMv2_3897_32_20
Type: CAZyme
Location: 19409 - 20428 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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