Cluster: HRGMv2_3897_CGC27
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3897
- CGC Family ID: CGCFAM_01542
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3897_9 | HRGMv2_3897_9_88 | 123617 | 125839 | - | GH92 |
| CAZyme | HRGMv2_3897_9 | HRGMv2_3897_9_89 | 125860 | 128130 | - | GH92 |
| CAZyme | HRGMv2_3897_9 | HRGMv2_3897_9_90 | 128185 | 130404 | - | GH92 |
| TF | HRGMv2_3897_9 | HRGMv2_3897_9_91 | 130568 | 131125 | + | GerE |
| STP | HRGMv2_3897_9 | HRGMv2_3897_9_92 | 131132 | 132139 | + | FecR |
| TC | HRGMv2_3897_9 | HRGMv2_3897_9_93 | 132320 | 135745 | + | 1.B.14.6.2 |
| TC | HRGMv2_3897_9 | HRGMv2_3897_9_94 | 135764 | 137563 | + | 8.A.46.2.1 |
Gene ID: HRGMv2_3897_9_88
Type: CAZyme
Location: 123617 - 125839 (-)
Type: CAZyme
Location: 123617 - 125839 (-)
Gene ID: HRGMv2_3897_9_89
Type: CAZyme
Location: 125860 - 128130 (-)
Type: CAZyme
Location: 125860 - 128130 (-)
Gene ID: HRGMv2_3897_9_90
Type: CAZyme
Location: 128185 - 130404 (-)
Type: CAZyme
Location: 128185 - 130404 (-)
Gene ID: HRGMv2_3897_9_91
Type: TF
Location: 130568 - 131125 (+)
Type: TF
Location: 130568 - 131125 (+)
Gene ID: HRGMv2_3897_9_92
Type: STP
Location: 131132 - 132139 (+)
Type: STP
Location: 131132 - 132139 (+)
Gene ID: HRGMv2_3897_9_93
Type: TC
Location: 132320 - 135745 (+)
Type: TC
Location: 132320 - 135745 (+)
Gene ID: HRGMv2_3897_9_94
Type: TC
Location: 135764 - 137563 (+)
Type: TC
Location: 135764 - 137563 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.