Cluster: HRGMv2_3897_CGC5
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_3897
- CGC Family ID: CGCFAM_00217
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3897_1 | HRGMv2_3897_1_164 | 230760 | 233888 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_3897_1 | HRGMv2_3897_1_165 | 233989 | 235224 | - | GH27 |
| TF | HRGMv2_3897_1 | HRGMv2_3897_1_166 | 235581 | 239474 | + | HTH_AraC |
| pfam | HRGMv2_3897_1 | HRGMv2_3897_1_167 | 239694 | 241241 | + | PDDEXK_9 | AAA-ATPase_like |
| CAZyme | HRGMv2_3897_1 | HRGMv2_3897_1_168 | 241484 | 242491 | - | GH43_17 |
| pfam | HRGMv2_3897_1 | HRGMv2_3897_1_169 | 242506 | 244533 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3897_1 | HRGMv2_3897_1_170 | 244546 | 247842 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_3897_1 | HRGMv2_3897_1_171 | 248099 | 249250 | - | GH43_24 |
| CAZyme | HRGMv2_3897_1 | HRGMv2_3897_1_172 | 249259 | 250095 | - | GH16_3 |
| CAZyme | HRGMv2_3897_1 | HRGMv2_3897_1_173 | 250185 | 251624 | - | GH16_3 |
| CAZyme | HRGMv2_3897_1 | HRGMv2_3897_1_174 | 251644 | 252528 | - | CBM32 |
| pfam | HRGMv2_3897_1 | HRGMv2_3897_1_175 | 252566 | 254254 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3897_1 | HRGMv2_3897_1_176 | 254285 | 257296 | - | 1.B.14.6.1 |
| pfam | HRGMv2_3897_1 | HRGMv2_3897_1_177 | 257324 | 259216 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3897_1 | HRGMv2_3897_1_178 | 259229 | 262345 | - | 1.B.14.6.1 |
| TF | HRGMv2_3897_1 | HRGMv2_3897_1_179 | 262706 | 266782 | + | HTH_AraC |
| CAZyme | HRGMv2_3897_1 | HRGMv2_3897_1_180 | 266941 | 269250 | - | GH105 | GH154 |
| CAZyme | HRGMv2_3897_1 | HRGMv2_3897_1_181 | 269414 | 270697 | - | PL42 |
Gene ID: HRGMv2_3897_1_164
Type: TC
Location: 230760 - 233888 (-)
Type: TC
Location: 230760 - 233888 (-)
Gene ID: HRGMv2_3897_1_165
Type: CAZyme
Location: 233989 - 235224 (-)
Type: CAZyme
Location: 233989 - 235224 (-)
Gene ID: HRGMv2_3897_1_166
Type: TF
Location: 235581 - 239474 (+)
Type: TF
Location: 235581 - 239474 (+)
Gene ID: HRGMv2_3897_1_167
Type: pfam
Location: 239694 - 241241 (+)
Type: pfam
Location: 239694 - 241241 (+)
Gene ID: HRGMv2_3897_1_168
Type: CAZyme
Location: 241484 - 242491 (-)
Type: CAZyme
Location: 241484 - 242491 (-)
Gene ID: HRGMv2_3897_1_169
Type: pfam
Location: 242506 - 244533 (-)
Type: pfam
Location: 242506 - 244533 (-)
Gene ID: HRGMv2_3897_1_170
Type: TC
Location: 244546 - 247842 (-)
Type: TC
Location: 244546 - 247842 (-)
Gene ID: HRGMv2_3897_1_171
Type: CAZyme
Location: 248099 - 249250 (-)
Type: CAZyme
Location: 248099 - 249250 (-)
Gene ID: HRGMv2_3897_1_172
Type: CAZyme
Location: 249259 - 250095 (-)
Type: CAZyme
Location: 249259 - 250095 (-)
Gene ID: HRGMv2_3897_1_173
Type: CAZyme
Location: 250185 - 251624 (-)
Type: CAZyme
Location: 250185 - 251624 (-)
Gene ID: HRGMv2_3897_1_174
Type: CAZyme
Location: 251644 - 252528 (-)
Type: CAZyme
Location: 251644 - 252528 (-)
Gene ID: HRGMv2_3897_1_175
Type: pfam
Location: 252566 - 254254 (-)
Type: pfam
Location: 252566 - 254254 (-)
Gene ID: HRGMv2_3897_1_176
Type: TC
Location: 254285 - 257296 (-)
Type: TC
Location: 254285 - 257296 (-)
Gene ID: HRGMv2_3897_1_177
Type: pfam
Location: 257324 - 259216 (-)
Type: pfam
Location: 257324 - 259216 (-)
Gene ID: HRGMv2_3897_1_178
Type: TC
Location: 259229 - 262345 (-)
Type: TC
Location: 259229 - 262345 (-)
Gene ID: HRGMv2_3897_1_179
Type: TF
Location: 262706 - 266782 (+)
Type: TF
Location: 262706 - 266782 (+)
Gene ID: HRGMv2_3897_1_180
Type: CAZyme
Location: 266941 - 269250 (-)
Type: CAZyme
Location: 266941 - 269250 (-)
Gene ID: HRGMv2_3897_1_181
Type: CAZyme
Location: 269414 - 270697 (-)
Type: CAZyme
Location: 269414 - 270697 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.