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Cluster: HRGMv2_3897_CGC48

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3897_29 HRGMv2_3897_29_3 2544 4433 + GH32
TC HRGMv2_3897_29 HRGMv2_3897_29_4 4550 5716 + 2.A.1.7.17
STP HRGMv2_3897_29 HRGMv2_3897_29_5 5718 6599 + PfkB
TC HRGMv2_3897_29 HRGMv2_3897_29_6 7028 10156 + 1.B.14.6.1
pfam HRGMv2_3897_29 HRGMv2_3897_29_7 10193 11956 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_3897_29 HRGMv2_3897_29_8 11988 13793 + GH32
TC HRGMv2_3897_29 HRGMv2_3897_29_9 13795 14949 + 2.A.1.7.17
STP HRGMv2_3897_29 HRGMv2_3897_29_10 14951 15832 + PfkB
TF HRGMv2_3897_29 HRGMv2_3897_29_11 15961 16842 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_3897_29 HRGMv2_3897_29_12 16985 19771 + GH2
TC HRGMv2_3897_29 HRGMv2_3897_29_13 19896 21284 + 2.A.1.1.55
Gene ID: HRGMv2_3897_29_3
Type: CAZyme
Location: 2544 - 4433 (+)
Gene ID: HRGMv2_3897_29_4
Type: TC
Location: 4550 - 5716 (+)
Gene ID: HRGMv2_3897_29_5
Type: STP
Location: 5718 - 6599 (+)
Gene ID: HRGMv2_3897_29_6
Type: TC
Location: 7028 - 10156 (+)
Gene ID: HRGMv2_3897_29_7
Type: pfam
Location: 10193 - 11956 (+)
Gene ID: HRGMv2_3897_29_8
Type: CAZyme
Location: 11988 - 13793 (+)
Gene ID: HRGMv2_3897_29_9
Type: TC
Location: 13795 - 14949 (+)
Gene ID: HRGMv2_3897_29_10
Type: STP
Location: 14951 - 15832 (+)
Gene ID: HRGMv2_3897_29_11
Type: TF
Location: 15961 - 16842 (-)
Gene ID: HRGMv2_3897_29_12
Type: CAZyme
Location: 16985 - 19771 (+)
Gene ID: HRGMv2_3897_29_13
Type: TC
Location: 19896 - 21284 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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