Genome Details
Selected Rep_genome_ID: HRGMv2_2300
Total Genomes Found: 5
Total Genomes Found: 5
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900551945
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| A72.bin_10 | 3,181,407 | 97.99% | 1.17% | China(Inner Mongolia) | Asia | IMGG |
| CGMR041538 | 2,704,021 | 98.11% | 0% | China | Asia | CGMR |
| GH091_12_sub | 3,001,409 | 98.66% | 1.68% | NA | Africa | H3AfricaPhase2 |
| HRGMv2_2300 | 3,048,514 | 98.65% | 0.02% | China | Asia | HRGM |
| Rep_2364 | 2,652,289 | 94.1135% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2300_CGC19 | CGCFAM_00060 | Yes | 8 | 4 | |
| HRGMv2_2300_CGC29 | CGCFAM_00157 | Yes | 4 | 1 | |
| HRGMv2_2300_CGC7 | CGCFAM_00234 | Yes | 5 | 1 | |
| HRGMv2_2300_CGC13 | CGCFAM_00288 | Yes | 4 | 1 | |
| HRGMv2_2300_CGC6 | CGCFAM_00622 | Yes | 9 | 1 | |
| HRGMv2_2300_CGC10 | CGCFAM_01198 | Yes | 5 | 1 | |
| HRGMv2_2300_CGC8 | CGCFAM_01465 | Yes | 5 | 1 | |
| HRGMv2_2300_CGC3 | CGCFAM_02080 | Yes | 5 | 1 | |
| HRGMv2_2300_CGC28 | CGCFAM_02897 | Yes | 4 | 1 | |
| HRGMv2_2300_CGC25 | CGCFAM_05202 | Yes | 17 | 7 | |
| HRGMv2_2300_CGC21 | CGCFAM_09958 | Yes | 9 | 2 | |
| HRGMv2_2300_CGC26 | CGCFAM_10026 | Yes | 4 | 1 |
Top CAZyme Families