Cluster: HRGMv2_2300_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2300
- CGC Family ID: CGCFAM_02080
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2300_1 | HRGMv2_2300_1_119 | 178672 | 180186 | + | 1.B.52.2.1 |
| pfam | HRGMv2_2300_1 | HRGMv2_2300_1_120 | 180290 | 181522 | + | DUF1015 |
| peptidase | HRGMv2_2300_1 | HRGMv2_2300_1_121 | 181542 | 182393 | + | S09.UPW |
| CAZyme | HRGMv2_2300_1 | HRGMv2_2300_1_122 | 182440 | 184836 | + | GH13_9 |
| TC | HRGMv2_2300_1 | HRGMv2_2300_1_123 | 184848 | 185750 | + | 1.A.23.2.1 |
Gene ID: HRGMv2_2300_1_119
Type: TC
Location: 178672 - 180186 (+)
Type: TC
Location: 178672 - 180186 (+)
Gene ID: HRGMv2_2300_1_120
Type: pfam
Location: 180290 - 181522 (+)
Type: pfam
Location: 180290 - 181522 (+)
Gene ID: HRGMv2_2300_1_121
Type: peptidase
Location: 181542 - 182393 (+)
Type: peptidase
Location: 181542 - 182393 (+)
Gene ID: HRGMv2_2300_1_122
Type: CAZyme
Location: 182440 - 184836 (+)
Type: CAZyme
Location: 182440 - 184836 (+)
Gene ID: HRGMv2_2300_1_123
Type: TC
Location: 184848 - 185750 (+)
Type: TC
Location: 184848 - 185750 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900551945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.