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Cluster: HRGMv2_2300_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2300_27 HRGMv2_2300_27_7 5433 7523 - 9.B.18.1.2
CAZyme HRGMv2_2300_27 HRGMv2_2300_27_8 8078 9490 - GH25
pfam HRGMv2_2300_27 HRGMv2_2300_27_9 9696 13358 - Beta_helix | Beta_helix | RicinB_lectin_2 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4
NULL(UNKNOWN) HRGMv2_2300_27 HRGMv2_2300_27_10 13434 15506 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2300_27 HRGMv2_2300_27_11 15490 16443 - GT2
pfam HRGMv2_2300_27 HRGMv2_2300_27_12 16481 17485 - Acyl_transf_3
pfam HRGMv2_2300_27 HRGMv2_2300_27_13 17498 19294 - NosD | NosD | Beta_helix
CAZyme HRGMv2_2300_27 HRGMv2_2300_27_14 19336 21198 - GT2
CAZyme HRGMv2_2300_27 HRGMv2_2300_27_15 21669 22619 - GT2
pfam HRGMv2_2300_27 HRGMv2_2300_27_16 22624 23724 - GLF | NAD_binding_8
TC HRGMv2_2300_27 HRGMv2_2300_27_17 23771 25036 - 3.A.1.103.1
TC HRGMv2_2300_27 HRGMv2_2300_27_18 25121 25900 - 3.A.1.103.4
pfam HRGMv2_2300_27 HRGMv2_2300_27_19 26089 28398 - Lipase_GDSL_2 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4 | Choline_bind_4
pfam HRGMv2_2300_27 HRGMv2_2300_27_20 28437 29405 - Glycos_transf_2
CAZyme HRGMv2_2300_27 HRGMv2_2300_27_21 29402 30700 - GT4
CAZyme HRGMv2_2300_27 HRGMv2_2300_27_22 30725 31465 - GT2
CAZyme HRGMv2_2300_27 HRGMv2_2300_27_23 32143 34998 - GH73
Gene ID: HRGMv2_2300_27_7
Type: TC
Location: 5433 - 7523 (-)
Gene ID: HRGMv2_2300_27_8
Type: CAZyme
Location: 8078 - 9490 (-)
Gene ID: HRGMv2_2300_27_9
Type: pfam
Location: 9696 - 13358 (-)
Gene ID: HRGMv2_2300_27_10
Type:
Location: 13434 - 15506 (-)
Gene ID: HRGMv2_2300_27_11
Type: CAZyme
Location: 15490 - 16443 (-)
Gene ID: HRGMv2_2300_27_12
Type: pfam
Location: 16481 - 17485 (-)
Gene ID: HRGMv2_2300_27_13
Type: pfam
Location: 17498 - 19294 (-)
Gene ID: HRGMv2_2300_27_14
Type: CAZyme
Location: 19336 - 21198 (-)
Gene ID: HRGMv2_2300_27_15
Type: CAZyme
Location: 21669 - 22619 (-)
Gene ID: HRGMv2_2300_27_16
Type: pfam
Location: 22624 - 23724 (-)
Gene ID: HRGMv2_2300_27_17
Type: TC
Location: 23771 - 25036 (-)
Gene ID: HRGMv2_2300_27_18
Type: TC
Location: 25121 - 25900 (-)
Gene ID: HRGMv2_2300_27_19
Type: pfam
Location: 26089 - 28398 (-)
Gene ID: HRGMv2_2300_27_20
Type: pfam
Location: 28437 - 29405 (-)
Gene ID: HRGMv2_2300_27_21
Type: CAZyme
Location: 29402 - 30700 (-)
Gene ID: HRGMv2_2300_27_22
Type: CAZyme
Location: 30725 - 31465 (-)
Gene ID: HRGMv2_2300_27_23
Type: CAZyme
Location: 32143 - 34998 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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