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Cluster: HRGMv2_2300_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2300_16 HRGMv2_2300_16_13 11923 13443 + 2.A.66.1.40
CAZyme HRGMv2_2300_16 HRGMv2_2300_16_14 13477 14436 + GT2
TC HRGMv2_2300_16 HRGMv2_2300_16_15 14518 15924 + 9.B.18.1.2
pfam HRGMv2_2300_16 HRGMv2_2300_16_16 16024 17040 + adh_short | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NmrA | NAD_binding_4 | KR | NAD_binding_10 | GDP_Man_Dehyd
CAZyme HRGMv2_2300_16 HRGMv2_2300_16_17 17143 18027 + GT2
NULL(UNKNOWN) HRGMv2_2300_16 HRGMv2_2300_16_18 18101 18889 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2300_16 HRGMv2_2300_16_19 19049 20125 + GT2
CAZyme HRGMv2_2300_16 HRGMv2_2300_16_20 20225 21412 + GT4
Gene ID: HRGMv2_2300_16_13
Type: TC
Location: 11923 - 13443 (+)
Gene ID: HRGMv2_2300_16_14
Type: CAZyme
Location: 13477 - 14436 (+)
Gene ID: HRGMv2_2300_16_15
Type: TC
Location: 14518 - 15924 (+)
Gene ID: HRGMv2_2300_16_16
Type: pfam
Location: 16024 - 17040 (+)
Gene ID: HRGMv2_2300_16_17
Type: CAZyme
Location: 17143 - 18027 (+)
Gene ID: HRGMv2_2300_16_18
Type:
Location: 18101 - 18889 (+)
Gene ID: HRGMv2_2300_16_19
Type: CAZyme
Location: 19049 - 20125 (+)
Gene ID: HRGMv2_2300_16_20
Type: CAZyme
Location: 20225 - 21412 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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