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Cluster: HRGMv2_2300_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2300_2 HRGMv2_2300_2_71 75680 76978 + GT2
TC HRGMv2_2300_2 HRGMv2_2300_2_72 77174 77671 - 2.A.87.3.3
pfam HRGMv2_2300_2 HRGMv2_2300_2_73 77815 78225 - NusG_II
TC HRGMv2_2300_2 HRGMv2_2300_2_74 78691 79491 - 3.D.6.1.2
TC HRGMv2_2300_2 HRGMv2_2300_2_75 79510 80082 - 3.D.6.1.2
TC HRGMv2_2300_2 HRGMv2_2300_2_76 80154 80819 - 3.D.6.1.2
TC HRGMv2_2300_2 HRGMv2_2300_2_77 80812 81462 - 3.D.6.1.2
TC HRGMv2_2300_2 HRGMv2_2300_2_78 81462 82421 - 3.D.6.1.2
TC HRGMv2_2300_2 HRGMv2_2300_2_79 82438 83754 - 3.D.6.1.2
Gene ID: HRGMv2_2300_2_71
Type: CAZyme
Location: 75680 - 76978 (+)
Gene ID: HRGMv2_2300_2_72
Type: TC
Location: 77174 - 77671 (-)
Gene ID: HRGMv2_2300_2_73
Type: pfam
Location: 77815 - 78225 (-)
Gene ID: HRGMv2_2300_2_74
Type: TC
Location: 78691 - 79491 (-)
Gene ID: HRGMv2_2300_2_75
Type: TC
Location: 79510 - 80082 (-)
Gene ID: HRGMv2_2300_2_76
Type: TC
Location: 80154 - 80819 (-)
Gene ID: HRGMv2_2300_2_77
Type: TC
Location: 80812 - 81462 (-)
Gene ID: HRGMv2_2300_2_78
Type: TC
Location: 81462 - 82421 (-)
Gene ID: HRGMv2_2300_2_79
Type: TC
Location: 82438 - 83754 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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