Cluster: HRGMv2_2300_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2300
- CGC Family ID: CGCFAM_01198
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2300_5 | HRGMv2_2300_5_15 | 15215 | 16813 | - | GH77 |
| STP | HRGMv2_2300_5 | HRGMv2_2300_5_16 | 16976 | 17440 | - | CheW |
| pfam | HRGMv2_2300_5 | HRGMv2_2300_5_17 | 17502 | 18623 | - | RF-1 | PCRF |
| TC | HRGMv2_2300_5 | HRGMv2_2300_5_18 | 18954 | 21521 | - | 3.A.5.1.3 |
| TC | HRGMv2_2300_5 | HRGMv2_2300_5_19 | 21630 | 23162 | - | 1.B.52.2.1 |
Gene ID: HRGMv2_2300_5_15
Type: CAZyme
Location: 15215 - 16813 (-)
Type: CAZyme
Location: 15215 - 16813 (-)
Gene ID: HRGMv2_2300_5_16
Type: STP
Location: 16976 - 17440 (-)
Type: STP
Location: 16976 - 17440 (-)
Gene ID: HRGMv2_2300_5_17
Type: pfam
Location: 17502 - 18623 (-)
Type: pfam
Location: 17502 - 18623 (-)
Gene ID: HRGMv2_2300_5_18
Type: TC
Location: 18954 - 21521 (-)
Type: TC
Location: 18954 - 21521 (-)
Gene ID: HRGMv2_2300_5_19
Type: TC
Location: 21630 - 23162 (-)
Type: TC
Location: 21630 - 23162 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp900551945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.