Genome Details
Selected Rep_genome_ID: HRGMv2_2073
Total Genomes Found: 19
Total Genomes Found: 19
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor intestinalis
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| AG200_bin.28 | 3,120,410 | 99.52% | 0.97% | NA | Africa | H3AfricaPhase2 |
| B38.bin_29 | 2,992,248 | 98.07% | 0.97% | China(Inner Mongolia) | Asia | IMGG |
| CGMR097229 | 2,853,409 | 97.1% | 0.97% | China | Asia | CGMR |
| GCA_021616095.1_ASM2161609v1_genomic | 3,042,766 | 98.55% | 2.42% | NA | Africa | H3AfricaPhase1 |
| GCA_021616895.1_ASM2161689v1_genomic | 3,134,206 | 99.52% | 0.97% | NA | Africa | H3AfricaPhase1 |
| GCA_021620065.1_ASM2162006v1_genomic | 2,912,967 | 97.38% | 1.45% | NA | Africa | H3AfricaPhase1 |
| GCA_021629325.1_ASM2162932v1_genomic | 2,932,435 | 97.83% | 1.93% | NA | Africa | H3AfricaPhase1 |
| GCA_021632185.1_ASM2163218v1_genomic | 2,905,496 | 90.98% | 3.67% | NA | Africa | H3AfricaPhase1 |
| GCA_021632285.1_ASM2163228v1_genomic | 3,278,318 | 98.29% | 2.43% | NA | Africa | H3AfricaPhase1 |
| GCA_021635405.1_ASM2163540v1_genomic | 2,955,547 | 94.2% | 1.29% | NA | Africa | H3AfricaPhase1 |
| GCA_021635735.1_ASM2163573v1_genomic | 2,545,518 | 91.1% | 1.5% | NA | Africa | H3AfricaPhase1 |
| GCA_021637665.1_ASM2163766v1_genomic | 3,159,307 | 99.52% | 1.49% | NA | Africa | H3AfricaPhase1 |
| HRGMv2_2073 | 3,060,748 | 98.87% | 0.483% | UK | Europe | HRGM |
| Rep_2217 | 3,555,056 | 99.5169% | 1.93237% | NA | NA | WIS |
| SPMP03_bin.77 | 2,999,566 | 98.55% | 0.97% | Singapore | Asia | SPMP |
| SPMP30_bin.56 | 2,801,657 | 93.72% | 1.45% | Singapore | Asia | SPMP |
| SPMP49_bin.111 | 2,897,561 | 91.96% | 3.62% | Singapore | Asia | SPMP |
| SPMP74_bin.72 | 3,147,811 | 97.34% | 1.93% | Singapore | Asia | SPMP |
| SPMP76_bin.51 | 2,567,277 | 92.13% | 1.88% | Singapore | Asia | SPMP |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2073_CGC37 | CGCFAM_00007 | Yes | 9 | 4 | |
| HRGMv2_2073_CGC41 | CGCFAM_00021 | Yes | 3 | 1 | |
| HRGMv2_2073_CGC3 | CGCFAM_00045 | Yes | 6 | 1 | alpha-glucan |
| HRGMv2_2073_CGC16 | CGCFAM_00047 | Yes | 8 | 1 | |
| HRGMv2_2073_CGC35 | CGCFAM_00168 | Yes | 17 | 7 | |
| HRGMv2_2073_CGC27 | CGCFAM_00307 | Yes | 7 | 2 | |
| HRGMv2_2073_CGC1 | CGCFAM_00312 | Yes | 11 | 2 | host glycan |
| HRGMv2_2073_CGC14 | CGCFAM_00636 | Yes | 3 | 1 | |
| HRGMv2_2073_CGC10 | CGCFAM_00704 | Yes | 15 | 2 | |
| HRGMv2_2073_CGC31 | CGCFAM_01144 | Yes | 4 | 1 | |
| HRGMv2_2073_CGC29 | CGCFAM_01345 | Yes | 3 | 1 | |
| HRGMv2_2073_CGC25 | CGCFAM_01676 | Yes | 7 | 1 | |
| HRGMv2_2073_CGC15 | CGCFAM_02989 | Yes | 8 | 2 | |
| HRGMv2_2073_CGC22 | CGCFAM_04035 | Yes | 10 | 2 | |
| HRGMv2_2073_CGC30 | CGCFAM_07747 | Yes | 7 | 2 | |
| HRGMv2_2073_CGC18 | CGCFAM_09952 | Yes | 8 | 2 |
Top CAZyme Families