Cluster: HRGMv2_2073_CGC25
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2073
- CGC Family ID: CGCFAM_01676
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2073_24 | HRGMv2_2073_24_41 | 42019 | 43344 | - | 2.A.66.1.33 |
| NULL(UNKNOWN) | HRGMv2_2073_24 | HRGMv2_2073_24_42 | 43372 | 43989 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_2073_24 | HRGMv2_2073_24_43 | 44002 | 44562 | - | Sigma70_r2 | Sigma70_r4_2 |
| TC | HRGMv2_2073_24 | HRGMv2_2073_24_44 | 44652 | 46409 | - | 1.B.52.2.2 |
| pfam | HRGMv2_2073_24 | HRGMv2_2073_24_45 | 46532 | 47305 | - | ThiF |
| pfam | HRGMv2_2073_24 | HRGMv2_2073_24_46 | 47527 | 48363 | - | AP_endonuc_2 |
| CAZyme | HRGMv2_2073_24 | HRGMv2_2073_24_47 | 48544 | 50100 | - | GH28 |
Gene ID: HRGMv2_2073_24_41
Type: TC
Location: 42019 - 43344 (-)
Type: TC
Location: 42019 - 43344 (-)
Gene ID: HRGMv2_2073_24_42
Type:
Location: 43372 - 43989 (-)
Type:
Location: 43372 - 43989 (-)
Gene ID: HRGMv2_2073_24_43
Type: STP
Location: 44002 - 44562 (-)
Type: STP
Location: 44002 - 44562 (-)
Gene ID: HRGMv2_2073_24_44
Type: TC
Location: 44652 - 46409 (-)
Type: TC
Location: 44652 - 46409 (-)
Gene ID: HRGMv2_2073_24_45
Type: pfam
Location: 46532 - 47305 (-)
Type: pfam
Location: 46532 - 47305 (-)
Gene ID: HRGMv2_2073_24_46
Type: pfam
Location: 47527 - 48363 (-)
Type: pfam
Location: 47527 - 48363 (-)
Gene ID: HRGMv2_2073_24_47
Type: CAZyme
Location: 48544 - 50100 (-)
Type: CAZyme
Location: 48544 - 50100 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.