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Cluster: HRGMv2_2073_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2073_41 HRGMv2_2073_41_1 1 2817 + GH25
pfam HRGMv2_2073_41 HRGMv2_2073_41_2 3097 4182 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd
pfam HRGMv2_2073_41 HRGMv2_2073_41_3 4261 5130 + NTP_transferase | NTP_transf_3
CAZyme HRGMv2_2073_41 HRGMv2_2073_41_4 5120 6418 + GH25
pfam HRGMv2_2073_41 HRGMv2_2073_41_5 6446 7030 + dTDP_sugar_isom
TC HRGMv2_2073_41 HRGMv2_2073_41_6 7005 8009 + 3.A.1.104.1
pfam HRGMv2_2073_41 HRGMv2_2073_41_7 8099 9637 + DUF6056
TC HRGMv2_2073_41 HRGMv2_2073_41_8 9644 10984 + 3.A.1.103.6
pfam HRGMv2_2073_41 HRGMv2_2073_41_9 10988 13084 + PCMT | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25
CAZyme HRGMv2_2073_41 HRGMv2_2073_41_10 13063 15078 + GT2
CAZyme HRGMv2_2073_41 HRGMv2_2073_41_11 15071 17128 + GT2
pfam HRGMv2_2073_41 HRGMv2_2073_41_12 17236 18957 + PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
CAZyme HRGMv2_2073_41 HRGMv2_2073_41_13 19005 20474 + GT2
CAZyme HRGMv2_2073_41 HRGMv2_2073_41_14 20471 21454 + GT2
TC HRGMv2_2073_41 HRGMv2_2073_41_15 21601 22962 + 9.B.18.1.1
pfam HRGMv2_2073_41 HRGMv2_2073_41_16 22980 24188 + LytR_cpsA_psr
CAZyme HRGMv2_2073_41 HRGMv2_2073_41_17 24319 25257 + GT2
Gene ID: HRGMv2_2073_41_1
Type: CAZyme
Location: 1 - 2817 (+)
Gene ID: HRGMv2_2073_41_2
Type: pfam
Location: 3097 - 4182 (+)
Gene ID: HRGMv2_2073_41_3
Type: pfam
Location: 4261 - 5130 (+)
Gene ID: HRGMv2_2073_41_4
Type: CAZyme
Location: 5120 - 6418 (+)
Gene ID: HRGMv2_2073_41_5
Type: pfam
Location: 6446 - 7030 (+)
Gene ID: HRGMv2_2073_41_6
Type: TC
Location: 7005 - 8009 (+)
Gene ID: HRGMv2_2073_41_7
Type: pfam
Location: 8099 - 9637 (+)
Gene ID: HRGMv2_2073_41_8
Type: TC
Location: 9644 - 10984 (+)
Gene ID: HRGMv2_2073_41_9
Type: pfam
Location: 10988 - 13084 (+)
Gene ID: HRGMv2_2073_41_10
Type: CAZyme
Location: 13063 - 15078 (+)
Gene ID: HRGMv2_2073_41_11
Type: CAZyme
Location: 15071 - 17128 (+)
Gene ID: HRGMv2_2073_41_12
Type: pfam
Location: 17236 - 18957 (+)
Gene ID: HRGMv2_2073_41_13
Type: CAZyme
Location: 19005 - 20474 (+)
Gene ID: HRGMv2_2073_41_14
Type: CAZyme
Location: 20471 - 21454 (+)
Gene ID: HRGMv2_2073_41_15
Type: TC
Location: 21601 - 22962 (+)
Gene ID: HRGMv2_2073_41_16
Type: pfam
Location: 22980 - 24188 (+)
Gene ID: HRGMv2_2073_41_17
Type: CAZyme
Location: 24319 - 25257 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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