Cluster: HRGMv2_2073_CGC10
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2073
- CGC Family ID: CGCFAM_00704
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2073_10 | HRGMv2_2073_10_50 | 60540 | 62480 | + | GH13_11 |
| pfam | HRGMv2_2073_10 | HRGMv2_2073_10_51 | 62490 | 63062 | + | DUF5662 |
| NULL(UNKNOWN) | HRGMv2_2073_10 | HRGMv2_2073_10_52 | 63097 | 63339 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2073_10 | HRGMv2_2073_10_53 | 63410 | 64474 | - | 3.A.1.11.7 |
| TC | HRGMv2_2073_10 | HRGMv2_2073_10_54 | 64507 | 65283 | - | 3.A.1.11.1 |
| TC | HRGMv2_2073_10 | HRGMv2_2073_10_55 | 65280 | 66092 | - | 3.A.1.11.8 |
| TC | HRGMv2_2073_10 | HRGMv2_2073_10_56 | 66085 | 67158 | - | 3.A.1.11.8 |
| pfam | HRGMv2_2073_10 | HRGMv2_2073_10_57 | 67430 | 68482 | + | Lactonase |
| pfam | HRGMv2_2073_10 | HRGMv2_2073_10_58 | 68813 | 70054 | + | DUF1015 |
| CAZyme | HRGMv2_2073_10 | HRGMv2_2073_10_59 | 70124 | 72460 | + | CBM48 | GH13_9 |
| TC | HRGMv2_2073_10 | HRGMv2_2073_10_60 | 72467 | 73324 | + | 1.A.23.2.1 |
| TC | HRGMv2_2073_10 | HRGMv2_2073_10_61 | 73418 | 74599 | + | 3.A.1.2.17 |
| TC | HRGMv2_2073_10 | HRGMv2_2073_10_62 | 74680 | 76224 | + | 3.A.1.2.12 |
| TC | HRGMv2_2073_10 | HRGMv2_2073_10_63 | 76229 | 77335 | + | 3.A.1.2.17 |
| TC | HRGMv2_2073_10 | HRGMv2_2073_10_64 | 77336 | 78295 | + | 3.A.1.2.12 |
Gene ID: HRGMv2_2073_10_50
Type: CAZyme
Location: 60540 - 62480 (+)
Type: CAZyme
Location: 60540 - 62480 (+)
Gene ID: HRGMv2_2073_10_51
Type: pfam
Location: 62490 - 63062 (+)
Type: pfam
Location: 62490 - 63062 (+)
Gene ID: HRGMv2_2073_10_52
Type:
Location: 63097 - 63339 (+)
Type:
Location: 63097 - 63339 (+)
Gene ID: HRGMv2_2073_10_53
Type: TC
Location: 63410 - 64474 (-)
Type: TC
Location: 63410 - 64474 (-)
Gene ID: HRGMv2_2073_10_54
Type: TC
Location: 64507 - 65283 (-)
Type: TC
Location: 64507 - 65283 (-)
Gene ID: HRGMv2_2073_10_55
Type: TC
Location: 65280 - 66092 (-)
Type: TC
Location: 65280 - 66092 (-)
Gene ID: HRGMv2_2073_10_56
Type: TC
Location: 66085 - 67158 (-)
Type: TC
Location: 66085 - 67158 (-)
Gene ID: HRGMv2_2073_10_57
Type: pfam
Location: 67430 - 68482 (+)
Type: pfam
Location: 67430 - 68482 (+)
Gene ID: HRGMv2_2073_10_58
Type: pfam
Location: 68813 - 70054 (+)
Type: pfam
Location: 68813 - 70054 (+)
Gene ID: HRGMv2_2073_10_59
Type: CAZyme
Location: 70124 - 72460 (+)
Type: CAZyme
Location: 70124 - 72460 (+)
Gene ID: HRGMv2_2073_10_60
Type: TC
Location: 72467 - 73324 (+)
Type: TC
Location: 72467 - 73324 (+)
Gene ID: HRGMv2_2073_10_61
Type: TC
Location: 73418 - 74599 (+)
Type: TC
Location: 73418 - 74599 (+)
Gene ID: HRGMv2_2073_10_62
Type: TC
Location: 74680 - 76224 (+)
Type: TC
Location: 74680 - 76224 (+)
Gene ID: HRGMv2_2073_10_63
Type: TC
Location: 76229 - 77335 (+)
Type: TC
Location: 76229 - 77335 (+)
Gene ID: HRGMv2_2073_10_64
Type: TC
Location: 77336 - 78295 (+)
Type: TC
Location: 77336 - 78295 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.