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Cluster: HRGMv2_2073_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2073_17 HRGMv2_2073_17_3 1315 2952 - 3.A.1.121.4
TF HRGMv2_2073_17 HRGMv2_2073_17_4 3128 4111 + LacI
CAZyme HRGMv2_2073_17 HRGMv2_2073_17_5 4362 4925 + CBM61
CAZyme HRGMv2_2073_17 HRGMv2_2073_17_6 4928 6001 + GH53
TC HRGMv2_2073_17 HRGMv2_2073_17_7 6036 7211 + 3.A.1.1.6
TC HRGMv2_2073_17 HRGMv2_2073_17_8 7219 8130 + 3.A.1.1.27
TC HRGMv2_2073_17 HRGMv2_2073_17_9 8131 8976 + 3.A.1.1.6
TC HRGMv2_2073_17 HRGMv2_2073_17_10 9072 10487 + 2.A.1.2.88
Gene ID: HRGMv2_2073_17_3
Type: TC
Location: 1315 - 2952 (-)
Gene ID: HRGMv2_2073_17_4
Type: TF
Location: 3128 - 4111 (+)
Gene ID: HRGMv2_2073_17_5
Type: CAZyme
Location: 4362 - 4925 (+)
Gene ID: HRGMv2_2073_17_6
Type: CAZyme
Location: 4928 - 6001 (+)
Gene ID: HRGMv2_2073_17_7
Type: TC
Location: 6036 - 7211 (+)
Gene ID: HRGMv2_2073_17_8
Type: TC
Location: 7219 - 8130 (+)
Gene ID: HRGMv2_2073_17_9
Type: TC
Location: 8131 - 8976 (+)
Gene ID: HRGMv2_2073_17_10
Type: TC
Location: 9072 - 10487 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2073_17_4 vegetarian > vegan 1.04561 0.00566
HRGMv2_2073_17_5 vegetarian > vegan 1.04699 0.00566

🧭 Explore Read Mapping of CGC

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