Cluster: HRGMv2_2073_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: HRGMv2_2073
- CGC Family ID: CGCFAM_00045
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2073_2 | HRGMv2_2073_2_41 | 43061 | 44806 | - | CBM34 | GH13_20 |
| TC | HRGMv2_2073_2 | HRGMv2_2073_2_42 | 44825 | 45667 | - | 3.A.1.1.2 |
| TC | HRGMv2_2073_2 | HRGMv2_2073_2_43 | 45664 | 46593 | - | 3.A.1.1.2 |
| TC | HRGMv2_2073_2 | HRGMv2_2073_2_44 | 46647 | 47906 | - | 3.A.1.1.16 |
| pfam | HRGMv2_2073_2 | HRGMv2_2073_2_45 | 47955 | 49145 | - | CBM26 | CBM26 | CBM26 |
| TC | HRGMv2_2073_2 | HRGMv2_2073_2_46 | 49546 | 51807 | - | 2.A.6.4.2 |
Gene ID: HRGMv2_2073_2_41
Type: CAZyme
Location: 43061 - 44806 (-)
Type: CAZyme
Location: 43061 - 44806 (-)
Gene ID: HRGMv2_2073_2_42
Type: TC
Location: 44825 - 45667 (-)
Type: TC
Location: 44825 - 45667 (-)
Gene ID: HRGMv2_2073_2_43
Type: TC
Location: 45664 - 46593 (-)
Type: TC
Location: 45664 - 46593 (-)
Gene ID: HRGMv2_2073_2_44
Type: TC
Location: 46647 - 47906 (-)
Type: TC
Location: 46647 - 47906 (-)
Gene ID: HRGMv2_2073_2_45
Type: pfam
Location: 47955 - 49145 (-)
Type: pfam
Location: 47955 - 49145 (-)
Gene ID: HRGMv2_2073_2_46
Type: TC
Location: 49546 - 51807 (-)
Type: TC
Location: 49546 - 51807 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Species
Acetatifactor intestinalis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2073_2_41 | vegetarian > vegan | 1.00948 | 0.00566 |
| HRGMv2_2073_2_42 | vegetarian > vegan | 1.02940 | 0.00566 |