dbCAN Logo

Genome Details

Selected Rep_genome_ID: HRGMv2_0389
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→
Species
Phocaeicola gallinarum
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
CGMR057080 3,200,928 97.92% 3.18% China Asia CGMR
HRGMv2_0389 3,258,483 98.87% 0% Luxembourg Europe HRGM
Rep_504 2,985,236 96.5772% 0.124844% NA NA WIS
VatanenT_2016_SRR4305192_bin.3 3,516,342 98.51% 0.309% Estonia Europe ELGG
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_0389_CGC31 CGCFAM_00017 Yes 17 2 fructan
HRGMv2_0389_CGC45 CGCFAM_00017 Yes 10 2 fructan
HRGMv2_0389_CGC19 CGCFAM_00028 Yes 4 3
HRGMv2_0389_CGC23 CGCFAM_00031 Yes 18 5 pectin/galactan
HRGMv2_0389_CGC5 CGCFAM_00038 Yes 7 3
HRGMv2_0389_CGC28 CGCFAM_00072 Yes 3 2
HRGMv2_0389_CGC7 CGCFAM_00173 Yes 7 1
HRGMv2_0389_CGC22 CGCFAM_00256 Yes 9 5
HRGMv2_0389_CGC47 CGCFAM_00256 Yes 7 3
HRGMv2_0389_CGC39 CGCFAM_00260 Yes 5 3
HRGMv2_0389_CGC15 CGCFAM_00360 Yes 10 2 host glycan
HRGMv2_0389_CGC33 CGCFAM_00495 Yes 5 2
HRGMv2_0389_CGC18 CGCFAM_00699 Yes 5 1
HRGMv2_0389_CGC24 CGCFAM_00895 Yes 6 1
HRGMv2_0389_CGC25 CGCFAM_01181 Yes 6 2
HRGMv2_0389_CGC40 CGCFAM_01309 Yes 8 5
HRGMv2_0389_CGC1 CGCFAM_01393 Yes 5 2
HRGMv2_0389_CGC38 CGCFAM_01542 Yes 9 3
HRGMv2_0389_CGC34 CGCFAM_01615 Yes 3 1
HRGMv2_0389_CGC37 CGCFAM_01686 Yes 4 3
HRGMv2_0389_CGC3 CGCFAM_01826 Yes 10 5
HRGMv2_0389_CGC20 CGCFAM_01846 Yes 4 1
HRGMv2_0389_CGC21 CGCFAM_02066 Yes 4 1
HRGMv2_0389_CGC16 CGCFAM_02770 Yes 3 1
HRGMv2_0389_CGC26 CGCFAM_03628 Yes 15 7
Top CAZyme Families