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Cluster: HRGMv2_0389_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0389_1 HRGMv2_0389_1_110 124473 126389 + GH43_19 | GH43_34
CAZyme HRGMv2_0389_1 HRGMv2_0389_1_111 126411 128900 + GH51_2
CAZyme HRGMv2_0389_1 HRGMv2_0389_1_112 128914 131256 + GH35
TC HRGMv2_0389_1 HRGMv2_0389_1_113 131840 134962 + 1.B.14.6.1
pfam HRGMv2_0389_1 HRGMv2_0389_1_114 134984 136495 + SusD_RagB | SusD-like_3
TC HRGMv2_0389_1 HRGMv2_0389_1_115 136601 136879 + 2.A.124.1.2
TC HRGMv2_0389_1 HRGMv2_0389_1_116 136876 137478 + 2.A.124.1.2
CAZyme HRGMv2_0389_1 HRGMv2_0389_1_117 137491 140661 + GH2
CAZyme HRGMv2_0389_1 HRGMv2_0389_1_118 140717 142633 + GH63
TC HRGMv2_0389_1 HRGMv2_0389_1_119 142857 144716 - 2.A.47.4.8
Gene ID: HRGMv2_0389_1_110
Type: CAZyme
Location: 124473 - 126389 (+)
Gene ID: HRGMv2_0389_1_111
Type: CAZyme
Location: 126411 - 128900 (+)
Gene ID: HRGMv2_0389_1_112
Type: CAZyme
Location: 128914 - 131256 (+)
Gene ID: HRGMv2_0389_1_113
Type: TC
Location: 131840 - 134962 (+)
Gene ID: HRGMv2_0389_1_114
Type: pfam
Location: 134984 - 136495 (+)
Gene ID: HRGMv2_0389_1_115
Type: TC
Location: 136601 - 136879 (+)
Gene ID: HRGMv2_0389_1_116
Type: TC
Location: 136876 - 137478 (+)
Gene ID: HRGMv2_0389_1_117
Type: CAZyme
Location: 137491 - 140661 (+)
Gene ID: HRGMv2_0389_1_118
Type: CAZyme
Location: 140717 - 142633 (+)
Gene ID: HRGMv2_0389_1_119
Type: TC
Location: 142857 - 144716 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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