Cluster: HRGMv2_0389_CGC23
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 5
- Substrate: pectin/galactan
- Genome ID: HRGMv2_0389
- CGC Family ID: CGCFAM_00031
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0389_7 | HRGMv2_0389_7_41 | 56722 | 57360 | - | 2.A.1.7.17 |
| CAZyme | HRGMv2_0389_7 | HRGMv2_0389_7_42 | 57581 | 58594 | - | GH53 |
| CAZyme | HRGMv2_0389_7 | HRGMv2_0389_7_43 | 58591 | 61056 | - | GH2 |
| CAZyme | HRGMv2_0389_7 | HRGMv2_0389_7_44 | 61286 | 62383 | - | GH53 |
| pfam | HRGMv2_0389_7 | HRGMv2_0389_7_45 | 62398 | 63846 | - | SusE | DUF5111 | DUF5114 |
| TC | HRGMv2_0389_7 | HRGMv2_0389_7_46 | 63865 | 65436 | - | 8.A.46.1.1 |
| TC | HRGMv2_0389_7 | HRGMv2_0389_7_47 | 65456 | 68428 | - | 1.B.14.6.1 |
| TF | HRGMv2_0389_7 | HRGMv2_0389_7_48 | 68543 | 72451 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_0389_7 | HRGMv2_0389_7_49 | 72510 | 74930 | - | GH2 |
| TC | HRGMv2_0389_7 | HRGMv2_0389_7_50 | 74927 | 75715 | - | 3.A.1.15.11 |
| pfam | HRGMv2_0389_7 | HRGMv2_0389_7_51 | 75723 | 76571 | - | ZnuA |
| CAZyme | HRGMv2_0389_7 | HRGMv2_0389_7_52 | 76853 | 78082 | - | GH27 |
| pfam | HRGMv2_0389_7 | HRGMv2_0389_7_53 | 78227 | 79630 | - | DUF6055 |
| pfam | HRGMv2_0389_7 | HRGMv2_0389_7_54 | 79627 | 81378 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0389_7 | HRGMv2_0389_7_55 | 81395 | 84571 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | HRGMv2_0389_7 | HRGMv2_0389_7_56 | 84781 | 85038 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0389_7 | HRGMv2_0389_7_57 | 84916 | 85575 | - | Methyltransf_30 |
| TC | HRGMv2_0389_7 | HRGMv2_0389_7_58 | 85580 | 86020 | - | 9.B.27.3.3 |
Gene ID: HRGMv2_0389_7_41
Type: TC
Location: 56722 - 57360 (-)
Type: TC
Location: 56722 - 57360 (-)
Gene ID: HRGMv2_0389_7_42
Type: CAZyme
Location: 57581 - 58594 (-)
Type: CAZyme
Location: 57581 - 58594 (-)
Gene ID: HRGMv2_0389_7_43
Type: CAZyme
Location: 58591 - 61056 (-)
Type: CAZyme
Location: 58591 - 61056 (-)
Gene ID: HRGMv2_0389_7_44
Type: CAZyme
Location: 61286 - 62383 (-)
Type: CAZyme
Location: 61286 - 62383 (-)
Gene ID: HRGMv2_0389_7_45
Type: pfam
Location: 62398 - 63846 (-)
Type: pfam
Location: 62398 - 63846 (-)
Gene ID: HRGMv2_0389_7_46
Type: TC
Location: 63865 - 65436 (-)
Type: TC
Location: 63865 - 65436 (-)
Gene ID: HRGMv2_0389_7_47
Type: TC
Location: 65456 - 68428 (-)
Type: TC
Location: 65456 - 68428 (-)
Gene ID: HRGMv2_0389_7_48
Type: TF
Location: 68543 - 72451 (-)
Type: TF
Location: 68543 - 72451 (-)
Gene ID: HRGMv2_0389_7_49
Type: CAZyme
Location: 72510 - 74930 (-)
Type: CAZyme
Location: 72510 - 74930 (-)
Gene ID: HRGMv2_0389_7_50
Type: TC
Location: 74927 - 75715 (-)
Type: TC
Location: 74927 - 75715 (-)
Gene ID: HRGMv2_0389_7_51
Type: pfam
Location: 75723 - 76571 (-)
Type: pfam
Location: 75723 - 76571 (-)
Gene ID: HRGMv2_0389_7_52
Type: CAZyme
Location: 76853 - 78082 (-)
Type: CAZyme
Location: 76853 - 78082 (-)
Gene ID: HRGMv2_0389_7_53
Type: pfam
Location: 78227 - 79630 (-)
Type: pfam
Location: 78227 - 79630 (-)
Gene ID: HRGMv2_0389_7_54
Type: pfam
Location: 79627 - 81378 (-)
Type: pfam
Location: 79627 - 81378 (-)
Gene ID: HRGMv2_0389_7_55
Type: TC
Location: 81395 - 84571 (-)
Type: TC
Location: 81395 - 84571 (-)
Gene ID: HRGMv2_0389_7_56
Type:
Location: 84781 - 85038 (+)
Type:
Location: 84781 - 85038 (+)
Gene ID: HRGMv2_0389_7_57
Type: pfam
Location: 84916 - 85575 (-)
Type: pfam
Location: 84916 - 85575 (-)
Gene ID: HRGMv2_0389_7_58
Type: TC
Location: 85580 - 86020 (-)
Type: TC
Location: 85580 - 86020 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola gallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.