Cluster: HRGMv2_0389_CGC26
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_0389
- CGC Family ID: CGCFAM_03628
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0389_9 | HRGMv2_0389_9_15 | 13977 | 15374 | + | 2.A.1.1.55 |
| STP | HRGMv2_0389_9 | HRGMv2_0389_9_16 | 15418 | 18720 | + | TPR_2 |
| CAZyme | HRGMv2_0389_9 | HRGMv2_0389_9_17 | 18736 | 20769 | + | GH97 |
| CAZyme | HRGMv2_0389_9 | HRGMv2_0389_9_18 | 21287 | 24406 | + | GH92 |
| CAZyme | HRGMv2_0389_9 | HRGMv2_0389_9_19 | 24500 | 27445 | - | CBM32 | GH2 |
| sulfatase | HRGMv2_0389_9 | HRGMv2_0389_9_20 | 27442 | 28473 | - | S1_22 |
| CAZyme | HRGMv2_0389_9 | HRGMv2_0389_9_21 | 28685 | 31093 | - | GH95 |
| TF | HRGMv2_0389_9 | HRGMv2_0389_9_22 | 31285 | 35253 | + | HTH_AraC |
| TC | HRGMv2_0389_9 | HRGMv2_0389_9_23 | 35745 | 38801 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0389_9 | HRGMv2_0389_9_24 | 38836 | 40488 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_0389_9 | HRGMv2_0389_9_25 | 40940 | 42958 | + | GH36 |
| CAZyme | HRGMv2_0389_9 | HRGMv2_0389_9_26 | 42971 | 44926 | + | CE20 | CE20 |
| CAZyme | HRGMv2_0389_9 | HRGMv2_0389_9_27 | 44973 | 47141 | + | GH36 |
| pfam | HRGMv2_0389_9 | HRGMv2_0389_9_28 | 47260 | 47868 | - | TMP-TENI |
| TC | HRGMv2_0389_9 | HRGMv2_0389_9_29 | 48185 | 48877 | - | 3.A.25.2.1 |
Gene ID: HRGMv2_0389_9_15
Type: TC
Location: 13977 - 15374 (+)
Type: TC
Location: 13977 - 15374 (+)
Gene ID: HRGMv2_0389_9_16
Type: STP
Location: 15418 - 18720 (+)
Type: STP
Location: 15418 - 18720 (+)
Gene ID: HRGMv2_0389_9_17
Type: CAZyme
Location: 18736 - 20769 (+)
Type: CAZyme
Location: 18736 - 20769 (+)
Gene ID: HRGMv2_0389_9_18
Type: CAZyme
Location: 21287 - 24406 (+)
Type: CAZyme
Location: 21287 - 24406 (+)
Gene ID: HRGMv2_0389_9_19
Type: CAZyme
Location: 24500 - 27445 (-)
Type: CAZyme
Location: 24500 - 27445 (-)
Gene ID: HRGMv2_0389_9_20
Type: sulfatase
Location: 27442 - 28473 (-)
Type: sulfatase
Location: 27442 - 28473 (-)
Gene ID: HRGMv2_0389_9_21
Type: CAZyme
Location: 28685 - 31093 (-)
Type: CAZyme
Location: 28685 - 31093 (-)
Gene ID: HRGMv2_0389_9_22
Type: TF
Location: 31285 - 35253 (+)
Type: TF
Location: 31285 - 35253 (+)
Gene ID: HRGMv2_0389_9_23
Type: TC
Location: 35745 - 38801 (+)
Type: TC
Location: 35745 - 38801 (+)
Gene ID: HRGMv2_0389_9_24
Type: pfam
Location: 38836 - 40488 (+)
Type: pfam
Location: 38836 - 40488 (+)
Gene ID: HRGMv2_0389_9_25
Type: CAZyme
Location: 40940 - 42958 (+)
Type: CAZyme
Location: 40940 - 42958 (+)
Gene ID: HRGMv2_0389_9_26
Type: CAZyme
Location: 42971 - 44926 (+)
Type: CAZyme
Location: 42971 - 44926 (+)
Gene ID: HRGMv2_0389_9_27
Type: CAZyme
Location: 44973 - 47141 (+)
Type: CAZyme
Location: 44973 - 47141 (+)
Gene ID: HRGMv2_0389_9_28
Type: pfam
Location: 47260 - 47868 (-)
Type: pfam
Location: 47260 - 47868 (-)
Gene ID: HRGMv2_0389_9_29
Type: TC
Location: 48185 - 48877 (-)
Type: TC
Location: 48185 - 48877 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola gallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.