Cluster: HRGMv2_0389_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0389
- CGC Family ID: CGCFAM_01181
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0389_8 | HRGMv2_0389_8_52 | 54593 | 55777 | + | CE1 |
| TF | HRGMv2_0389_8 | HRGMv2_0389_8_53 | 55857 | 56714 | + | HTH_AraC |
| NULL(UNKNOWN) | HRGMv2_0389_8 | HRGMv2_0389_8_54 | 56860 | 57369 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0389_8 | HRGMv2_0389_8_55 | 57560 | 59422 | + | CE1 |
| TC | HRGMv2_0389_8 | HRGMv2_0389_8_56 | 59591 | 60436 | + | 8.A.5.1.6 |
| TC | HRGMv2_0389_8 | HRGMv2_0389_8_57 | 60631 | 61578 | - | 8.A.5.1.6 |
Gene ID: HRGMv2_0389_8_52
Type: CAZyme
Location: 54593 - 55777 (+)
Type: CAZyme
Location: 54593 - 55777 (+)
Gene ID: HRGMv2_0389_8_53
Type: TF
Location: 55857 - 56714 (+)
Type: TF
Location: 55857 - 56714 (+)
Gene ID: HRGMv2_0389_8_54
Type:
Location: 56860 - 57369 (+)
Type:
Location: 56860 - 57369 (+)
Gene ID: HRGMv2_0389_8_55
Type: CAZyme
Location: 57560 - 59422 (+)
Type: CAZyme
Location: 57560 - 59422 (+)
Gene ID: HRGMv2_0389_8_56
Type: TC
Location: 59591 - 60436 (+)
Type: TC
Location: 59591 - 60436 (+)
Gene ID: HRGMv2_0389_8_57
Type: TC
Location: 60631 - 61578 (-)
Type: TC
Location: 60631 - 61578 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola gallinarum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.