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Cluster: HRGMv2_0389_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0389_21 HRGMv2_0389_21_18 24259 25269 - GT90
TF HRGMv2_0389_21 HRGMv2_0389_21_19 25961 26335 + DUF24
CAZyme HRGMv2_0389_21 HRGMv2_0389_21_20 26439 27365 + GT8
CAZyme HRGMv2_0389_21 HRGMv2_0389_21_21 27370 28278 + GT32
CAZyme HRGMv2_0389_21 HRGMv2_0389_21_22 28470 29384 - GT2
pfam HRGMv2_0389_21 HRGMv2_0389_21_23 29398 30312 - Lip_A_acyltrans
TC HRGMv2_0389_21 HRGMv2_0389_21_24 30429 32270 + 3.A.1.106.2
CAZyme HRGMv2_0389_21 HRGMv2_0389_21_25 32439 33335 - GT2
Gene ID: HRGMv2_0389_21_18
Type: CAZyme
Location: 24259 - 25269 (-)
Gene ID: HRGMv2_0389_21_19
Type: TF
Location: 25961 - 26335 (+)
Gene ID: HRGMv2_0389_21_20
Type: CAZyme
Location: 26439 - 27365 (+)
Gene ID: HRGMv2_0389_21_21
Type: CAZyme
Location: 27370 - 28278 (+)
Gene ID: HRGMv2_0389_21_22
Type: CAZyme
Location: 28470 - 29384 (-)
Gene ID: HRGMv2_0389_21_23
Type: pfam
Location: 29398 - 30312 (-)
Gene ID: HRGMv2_0389_21_24
Type: TC
Location: 30429 - 32270 (+)
Gene ID: HRGMv2_0389_21_25
Type: CAZyme
Location: 32439 - 33335 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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