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Cluster: HRGMv2_0389_CGC45

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0389_26 HRGMv2_0389_26_14 12639 13406 - 3.A.1.27.4
TC HRGMv2_0389_26 HRGMv2_0389_26_15 13403 14146 - 3.A.1.27.2
TC HRGMv2_0389_26 HRGMv2_0389_26_16 14300 15118 + 1.B.42.1.2
pfam HRGMv2_0389_26 HRGMv2_0389_26_17 15487 15741 + Ribosomal_L31
CAZyme HRGMv2_0389_26 HRGMv2_0389_26_18 15824 16672 - GH16_3
CAZyme HRGMv2_0389_26 HRGMv2_0389_26_19 16804 17682 - CBM32
pfam HRGMv2_0389_26 HRGMv2_0389_26_20 17722 19404 - SusD_RagB | SusD-like_3
TC HRGMv2_0389_26 HRGMv2_0389_26_21 19431 22448 - 1.B.14.6.1
pfam HRGMv2_0389_26 HRGMv2_0389_26_22 22611 24500 - SusD_RagB | SusD-like_3
TC HRGMv2_0389_26 HRGMv2_0389_26_23 24523 27648 - 1.B.14.6.1
Gene ID: HRGMv2_0389_26_14
Type: TC
Location: 12639 - 13406 (-)
Gene ID: HRGMv2_0389_26_15
Type: TC
Location: 13403 - 14146 (-)
Gene ID: HRGMv2_0389_26_16
Type: TC
Location: 14300 - 15118 (+)
Gene ID: HRGMv2_0389_26_17
Type: pfam
Location: 15487 - 15741 (+)
Gene ID: HRGMv2_0389_26_18
Type: CAZyme
Location: 15824 - 16672 (-)
Gene ID: HRGMv2_0389_26_19
Type: CAZyme
Location: 16804 - 17682 (-)
Gene ID: HRGMv2_0389_26_20
Type: pfam
Location: 17722 - 19404 (-)
Gene ID: HRGMv2_0389_26_21
Type: TC
Location: 19431 - 22448 (-)
Gene ID: HRGMv2_0389_26_22
Type: pfam
Location: 22611 - 24500 (-)
Gene ID: HRGMv2_0389_26_23
Type: TC
Location: 24523 - 27648 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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