Genome Details
Selected Rep_genome_ID: C171.bin_2
Total Genomes Found: 2
Total Genomes Found: 2
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A hominis
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| C171.bin_2 | 3,043,171 | 100% | 0% | China(Inner Mongolia) | Asia | IMGG |
| SPMP03_bin.17 | 2,911,481 | 97.12% | 0% | Singapore | Asia | SPMP |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| C171.bin_2_CGC30 | CGCFAM_00001 | Yes | 6 | 3 | pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan |
| C171.bin_2_CGC15 | CGCFAM_00006 | Yes | 12 | 8 | |
| C171.bin_2_CGC25 | CGCFAM_00013 | Yes | 6 | 1 | |
| C171.bin_2_CGC16 | CGCFAM_00061 | Yes | 5 | 2 | |
| C171.bin_2_CGC10 | CGCFAM_00436 | Yes | 11 | 1 | |
| C171.bin_2_CGC24 | CGCFAM_00915 | Yes | 11 | 1 | |
| C171.bin_2_CGC21 | CGCFAM_01217 | Yes | 8 | 3 | |
| C171.bin_2_CGC34 | CGCFAM_01423 | Yes | 7 | 4 | |
| C171.bin_2_CGC33 | CGCFAM_02153 | Yes | 3 | 1 | |
| C171.bin_2_CGC22 | CGCFAM_02162 | Yes | 4 | 1 | |
| C171.bin_2_CGC40 | CGCFAM_02163 | Yes | 5 | 1 | |
| C171.bin_2_CGC12 | CGCFAM_02296 | Yes | 11 | 4 | xylan |
| C171.bin_2_CGC3 | CGCFAM_03644 | Yes | 9 | 3 | |
| C171.bin_2_CGC35 | CGCFAM_03645 | Yes | 3 | 1 | |
| C171.bin_2_CGC8 | CGCFAM_05026 | Yes | 3 | 1 | |
| C171.bin_2_CGC28 | CGCFAM_05215 | Yes | 9 | 3 | |
| C171.bin_2_CGC7 | CGCFAM_05216 | Yes | 4 | 1 | |
| C171.bin_2_CGC17 | CGCFAM_07947 | Yes | 3 | 1 | |
| C171.bin_2_CGC19 | CGCFAM_07948 | Yes | 4 | 1 |
Top CAZyme Families