Cluster: C171.bin_2_CGC34
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: C171.bin_2
- CGC Family ID: CGCFAM_01423
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C171_contig_3281 | C171_contig_3281_211 | 250079 | 252715 | + | CBM67 | GH78 |
| CAZyme | C171_contig_3281 | C171_contig_3281_212 | 252743 | 255166 | + | GH2 |
| pfam | C171_contig_3281 | C171_contig_3281_213 | 255179 | 256150 | + | ROK |
| STP | C171_contig_3281 | C171_contig_3281_214 | 256153 | 256743 | + | SIS |
| TC | C171_contig_3281 | C171_contig_3281_215 | 256781 | 257938 | + | 2.A.1.7.17 |
| CAZyme | C171_contig_3281 | C171_contig_3281_216 | 257960 | 260029 | + | GH36 |
| CAZyme | C171_contig_3281 | C171_contig_3281_217 | 260058 | 262133 | + | GH36 |
Gene ID: C171_contig_3281_211
Type: CAZyme
Location: 250079 - 252715 (+)
Type: CAZyme
Location: 250079 - 252715 (+)
Gene ID: C171_contig_3281_212
Type: CAZyme
Location: 252743 - 255166 (+)
Type: CAZyme
Location: 252743 - 255166 (+)
Gene ID: C171_contig_3281_213
Type: pfam
Location: 255179 - 256150 (+)
Type: pfam
Location: 255179 - 256150 (+)
Gene ID: C171_contig_3281_214
Type: STP
Location: 256153 - 256743 (+)
Type: STP
Location: 256153 - 256743 (+)
Gene ID: C171_contig_3281_215
Type: TC
Location: 256781 - 257938 (+)
Type: TC
Location: 256781 - 257938 (+)
Gene ID: C171_contig_3281_216
Type: CAZyme
Location: 257960 - 260029 (+)
Type: CAZyme
Location: 257960 - 260029 (+)
Gene ID: C171_contig_3281_217
Type: CAZyme
Location: 260058 - 262133 (+)
Type: CAZyme
Location: 260058 - 262133 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C171_contig_3281_212 | vegetarian > omnivore | 1.00918 | 0.01434 |
| C171_contig_3281_214 | vegetarian > omnivore | 1.32121 | 0.01434 |
| C171_contig_3281_214 | vegetarian > vegan | 1.23297 | 0.01074 |