Cluster: C171.bin_2_CGC12
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate: xylan
- Genome ID: C171.bin_2
- CGC Family ID: CGCFAM_02296
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C171_contig_4031 | C171_contig_4031_462 | 559754 | 561154 | + | GH175 |
| STP | C171_contig_4031 | C171_contig_4031_463 | 561507 | 562253 | + | NUDIX |
| CAZyme | C171_contig_4031 | C171_contig_4031_464 | 562310 | 564781 | + | GH95 |
| pfam | C171_contig_4031 | C171_contig_4031_465 | 564795 | 566300 | + | FGGY_N | FGGY_C |
| NULL(UNKNOWN) | C171_contig_4031 | C171_contig_4031_466 | 566339 | 567652 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | C171_contig_4031 | C171_contig_4031_467 | 567726 | 569132 | + | 2.A.1.1.3 |
| CAZyme | C171_contig_4031 | C171_contig_4031_468 | 569238 | 571799 | + | GH3 |
| CAZyme | C171_contig_4031 | C171_contig_4031_469 | 571913 | 575155 | - | GH106 |
| NULL(UNKNOWN) | C171_contig_4031 | C171_contig_4031_470 | 575361 | 575699 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C171_contig_4031 | C171_contig_4031_471 | 575857 | 576603 | - | Pro_CA |
| TC | C171_contig_4031 | C171_contig_4031_472 | 576618 | 578150 | - | 3.B.1.1.2 |
Gene ID: C171_contig_4031_462
Type: CAZyme
Location: 559754 - 561154 (+)
Type: CAZyme
Location: 559754 - 561154 (+)
Gene ID: C171_contig_4031_463
Type: STP
Location: 561507 - 562253 (+)
Type: STP
Location: 561507 - 562253 (+)
Gene ID: C171_contig_4031_464
Type: CAZyme
Location: 562310 - 564781 (+)
Type: CAZyme
Location: 562310 - 564781 (+)
Gene ID: C171_contig_4031_465
Type: pfam
Location: 564795 - 566300 (+)
Type: pfam
Location: 564795 - 566300 (+)
Gene ID: C171_contig_4031_466
Type:
Location: 566339 - 567652 (+)
Type:
Location: 566339 - 567652 (+)
Gene ID: C171_contig_4031_467
Type: TC
Location: 567726 - 569132 (+)
Type: TC
Location: 567726 - 569132 (+)
Gene ID: C171_contig_4031_468
Type: CAZyme
Location: 569238 - 571799 (+)
Type: CAZyme
Location: 569238 - 571799 (+)
Gene ID: C171_contig_4031_469
Type: CAZyme
Location: 571913 - 575155 (-)
Type: CAZyme
Location: 571913 - 575155 (-)
Gene ID: C171_contig_4031_470
Type:
Location: 575361 - 575699 (-)
Type:
Location: 575361 - 575699 (-)
Gene ID: C171_contig_4031_471
Type: pfam
Location: 575857 - 576603 (-)
Type: pfam
Location: 575857 - 576603 (-)
Gene ID: C171_contig_4031_472
Type: TC
Location: 576618 - 578150 (-)
Type: TC
Location: 576618 - 578150 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.