Cluster: C171.bin_2_CGC24
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: C171.bin_2
- CGC Family ID: CGCFAM_00915
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C171_contig_2390 | C171_contig_2390_393 | 445020 | 446381 | - | GH177 |
| TC | C171_contig_2390 | C171_contig_2390_394 | 446442 | 448013 | - | 9.A.25.1.1 |
| TC | C171_contig_2390 | C171_contig_2390_395 | 448478 | 449344 | - | 3.A.2.1.5 |
| TC | C171_contig_2390 | C171_contig_2390_396 | 449348 | 450928 | - | 3.A.2.1.2 |
| pfam | C171_contig_2390 | C171_contig_2390_397 | 450956 | 451510 | - | OSCP |
| pfam | C171_contig_2390 | C171_contig_2390_398 | 451514 | 452017 | - | ATP-synt_B | YMF19 |
| TC | C171_contig_2390 | C171_contig_2390_399 | 452036 | 452284 | - | 3.A.2.1.6 |
| TC | C171_contig_2390 | C171_contig_2390_400 | 452343 | 453419 | - | 3.A.2.1.7 |
| NULL(UNKNOWN) | C171_contig_2390 | C171_contig_2390_401 | 453412 | 453819 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C171_contig_2390 | C171_contig_2390_402 | 453876 | 454118 | - | ATP-synt_DE_N |
| TC | C171_contig_2390 | C171_contig_2390_403 | 454115 | 455659 | - | 3.A.2.1.2 |
Gene ID: C171_contig_2390_393
Type: CAZyme
Location: 445020 - 446381 (-)
Type: CAZyme
Location: 445020 - 446381 (-)
Gene ID: C171_contig_2390_394
Type: TC
Location: 446442 - 448013 (-)
Type: TC
Location: 446442 - 448013 (-)
Gene ID: C171_contig_2390_395
Type: TC
Location: 448478 - 449344 (-)
Type: TC
Location: 448478 - 449344 (-)
Gene ID: C171_contig_2390_396
Type: TC
Location: 449348 - 450928 (-)
Type: TC
Location: 449348 - 450928 (-)
Gene ID: C171_contig_2390_397
Type: pfam
Location: 450956 - 451510 (-)
Type: pfam
Location: 450956 - 451510 (-)
Gene ID: C171_contig_2390_398
Type: pfam
Location: 451514 - 452017 (-)
Type: pfam
Location: 451514 - 452017 (-)
Gene ID: C171_contig_2390_399
Type: TC
Location: 452036 - 452284 (-)
Type: TC
Location: 452036 - 452284 (-)
Gene ID: C171_contig_2390_400
Type: TC
Location: 452343 - 453419 (-)
Type: TC
Location: 452343 - 453419 (-)
Gene ID: C171_contig_2390_401
Type:
Location: 453412 - 453819 (-)
Type:
Location: 453412 - 453819 (-)
Gene ID: C171_contig_2390_402
Type: pfam
Location: 453876 - 454118 (-)
Type: pfam
Location: 453876 - 454118 (-)
Gene ID: C171_contig_2390_403
Type: TC
Location: 454115 - 455659 (-)
Type: TC
Location: 454115 - 455659 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C171_contig_2390_393 | vegetarian > omnivore | 1.18675 | 0.01458 |
| C171_contig_2390_393 | vegetarian > vegan | 1.48682 | 0.00229 |
| C171_contig_2390_402 | vegetarian > vegan | 1.17463 | 0.01127 |