Cluster: C171.bin_2_CGC30
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: C171.bin_2
- CGC Family ID: CGCFAM_00001
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C171_contig_3281 | C171_contig_3281_42 | 41227 | 42597 | - | GH144 |
| NULL(UNKNOWN) | C171_contig_3281 | C171_contig_3281_43 | 42680 | 44323 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C171_contig_3281 | C171_contig_3281_44 | 44357 | 46636 | - | GH3 |
| CAZyme | C171_contig_3281 | C171_contig_3281_45 | 46642 | 48288 | - | GH144 |
| pfam | C171_contig_3281 | C171_contig_3281_46 | 48275 | 49921 | - | SusD_RagB | SusD-like_3 |
| TC | C171_contig_3281 | C171_contig_3281_47 | 49942 | 52986 | - | 1.B.14.6.1 |
Gene ID: C171_contig_3281_42
Type: CAZyme
Location: 41227 - 42597 (-)
Type: CAZyme
Location: 41227 - 42597 (-)
Gene ID: C171_contig_3281_43
Type:
Location: 42680 - 44323 (-)
Type:
Location: 42680 - 44323 (-)
Gene ID: C171_contig_3281_44
Type: CAZyme
Location: 44357 - 46636 (-)
Type: CAZyme
Location: 44357 - 46636 (-)
Gene ID: C171_contig_3281_45
Type: CAZyme
Location: 46642 - 48288 (-)
Type: CAZyme
Location: 46642 - 48288 (-)
Gene ID: C171_contig_3281_46
Type: pfam
Location: 48275 - 49921 (-)
Type: pfam
Location: 48275 - 49921 (-)
Gene ID: C171_contig_3281_47
Type: TC
Location: 49942 - 52986 (-)
Type: TC
Location: 49942 - 52986 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.