Cluster: C171.bin_2_CGC3
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: C171.bin_2
- CGC Family ID: CGCFAM_03644
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | C171_contig_3358 | C171_contig_3358_200 | 227689 | 229080 | - | CE11 |
| NULL(UNKNOWN) | C171_contig_3358 | C171_contig_3358_201 | 229116 | 230027 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | C171_contig_3358 | C171_contig_3358_202 | 230087 | 230935 | + | adh_short | adh_short_C2 |
| CAZyme | C171_contig_3358 | C171_contig_3358_203 | 231055 | 232482 | - | CE20 |
| CAZyme | C171_contig_3358 | C171_contig_3358_204 | 232508 | 234001 | - | CBM91 | GH43_9 |
| TC | C171_contig_3358 | C171_contig_3358_205 | 234092 | 235195 | - | 2.A.86.1.8 |
| pfam | C171_contig_3358 | C171_contig_3358_206 | 235276 | 235932 | - | PS_Dcarbxylase |
| pfam | C171_contig_3358 | C171_contig_3358_207 | 235951 | 236790 | - | CTP_transf_1 |
| TC | C171_contig_3358 | C171_contig_3358_208 | 236771 | 238735 | - | 3.A.25.2.1 |
Gene ID: C171_contig_3358_200
Type: CAZyme
Location: 227689 - 229080 (-)
Type: CAZyme
Location: 227689 - 229080 (-)
Gene ID: C171_contig_3358_201
Type:
Location: 229116 - 230027 (+)
Type:
Location: 229116 - 230027 (+)
Gene ID: C171_contig_3358_202
Type: pfam
Location: 230087 - 230935 (+)
Type: pfam
Location: 230087 - 230935 (+)
Gene ID: C171_contig_3358_203
Type: CAZyme
Location: 231055 - 232482 (-)
Type: CAZyme
Location: 231055 - 232482 (-)
Gene ID: C171_contig_3358_204
Type: CAZyme
Location: 232508 - 234001 (-)
Type: CAZyme
Location: 232508 - 234001 (-)
Gene ID: C171_contig_3358_205
Type: TC
Location: 234092 - 235195 (-)
Type: TC
Location: 234092 - 235195 (-)
Gene ID: C171_contig_3358_206
Type: pfam
Location: 235276 - 235932 (-)
Type: pfam
Location: 235276 - 235932 (-)
Gene ID: C171_contig_3358_207
Type: pfam
Location: 235951 - 236790 (-)
Type: pfam
Location: 235951 - 236790 (-)
Gene ID: C171_contig_3358_208
Type: TC
Location: 236771 - 238735 (-)
Type: TC
Location: 236771 - 238735 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C171_contig_3358_206 | vegetarian > vegan | 1.38119 | 0.00547 |