Cluster: C171.bin_2_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: C171.bin_2
- CGC Family ID: CGCFAM_00013
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C171_contig_2390 | C171_contig_2390_448 | 501573 | 503843 | + | 2.A.37.1.5 |
| pfam | C171_contig_2390 | C171_contig_2390_449 | 503936 | 505390 | + | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| TC | C171_contig_2390 | C171_contig_2390_450 | 505412 | 506659 | + | 9.B.146.1.6 |
| pfam | C171_contig_2390 | C171_contig_2390_451 | 506662 | 508002 | + | Mur_ligase_C | Mur_ligase_M | MurD_N | MurD-like_N |
| TC | C171_contig_2390 | C171_contig_2390_452 | 508033 | 509319 | + | 2.A.103.1.3 |
| CAZyme | C171_contig_2390 | C171_contig_2390_453 | 509378 | 510493 | + | GT28 |
Gene ID: C171_contig_2390_448
Type: TC
Location: 501573 - 503843 (+)
Type: TC
Location: 501573 - 503843 (+)
Gene ID: C171_contig_2390_449
Type: pfam
Location: 503936 - 505390 (+)
Type: pfam
Location: 503936 - 505390 (+)
Gene ID: C171_contig_2390_450
Type: TC
Location: 505412 - 506659 (+)
Type: TC
Location: 505412 - 506659 (+)
Gene ID: C171_contig_2390_451
Type: pfam
Location: 506662 - 508002 (+)
Type: pfam
Location: 506662 - 508002 (+)
Gene ID: C171_contig_2390_452
Type: TC
Location: 508033 - 509319 (+)
Type: TC
Location: 508033 - 509319 (+)
Gene ID: C171_contig_2390_453
Type: CAZyme
Location: 509378 - 510493 (+)
Type: CAZyme
Location: 509378 - 510493 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| C171_contig_2390_450 | vegetarian > vegan | 1.17933 | 0.00229 |