Cluster: C171.bin_2_CGC21
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: C171.bin_2
- CGC Family ID: CGCFAM_01217
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | C171_contig_2390 | C171_contig_2390_284 | 298211 | 300946 | + | 4.A.2.1.17 |
| STP | C171_contig_2390 | C171_contig_2390_285 | 301662 | 303002 | - | EPSP_synthase |
| CAZyme | C171_contig_2390 | C171_contig_2390_286 | 303080 | 303838 | - | GT2 |
| NULL(UNKNOWN) | C171_contig_2390 | C171_contig_2390_287 | 303890 | 304177 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | C171_contig_2390 | C171_contig_2390_288 | 304340 | 307153 | + | GH2 |
| TC | C171_contig_2390 | C171_contig_2390_289 | 307166 | 308506 | + | 2.A.38.1.1 |
| pfam | C171_contig_2390 | C171_contig_2390_290 | 308589 | 310094 | + | GH3 | GH3_M | GH3_C |
| CAZyme | C171_contig_2390 | C171_contig_2390_291 | 310091 | 311269 | + | GT94 |
Gene ID: C171_contig_2390_284
Type: TC
Location: 298211 - 300946 (+)
Type: TC
Location: 298211 - 300946 (+)
Gene ID: C171_contig_2390_285
Type: STP
Location: 301662 - 303002 (-)
Type: STP
Location: 301662 - 303002 (-)
Gene ID: C171_contig_2390_286
Type: CAZyme
Location: 303080 - 303838 (-)
Type: CAZyme
Location: 303080 - 303838 (-)
Gene ID: C171_contig_2390_287
Type:
Location: 303890 - 304177 (-)
Type:
Location: 303890 - 304177 (-)
Gene ID: C171_contig_2390_288
Type: CAZyme
Location: 304340 - 307153 (+)
Type: CAZyme
Location: 304340 - 307153 (+)
Gene ID: C171_contig_2390_289
Type: TC
Location: 307166 - 308506 (+)
Type: TC
Location: 307166 - 308506 (+)
Gene ID: C171_contig_2390_290
Type: pfam
Location: 308589 - 310094 (+)
Type: pfam
Location: 308589 - 310094 (+)
Gene ID: C171_contig_2390_291
Type: CAZyme
Location: 310091 - 311269 (+)
Type: CAZyme
Location: 310091 - 311269 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes_A
Species
Alistipes_A hominis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.