Genome Details
Selected Rep_genome_ID: A129.bin_1
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Amedibacterium
Species
Amedibacterium intestinale
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| A129.bin_1 | 2,766,031 | 100% | 0% | China(Inner Mongolia) | Asia | IMGG |
| CGMR055236 | 2,372,787 | 100% | 0.47% | China | Asia | CGMR |
| Rep_1278 | 2,325,128 | 100% | 0% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| A129.bin_1_CGC13 | CGCFAM_00003 | Yes | 9 | 3 | |
| A129.bin_1_CGC17 | CGCFAM_00012 | Yes | 3 | 1 | host glycan/beta-glucan |
| A129.bin_1_CGC22 | CGCFAM_00012 | Yes | 4 | 1 | host glycan/beta-glucan |
| A129.bin_1_CGC21 | CGCFAM_00020 | Yes | 5 | 2 | host glycan/beta-glucan |
| A129.bin_1_CGC14 | CGCFAM_00027 | Yes | 3 | 1 | |
| A129.bin_1_CGC12 | CGCFAM_00092 | Yes | 7 | 2 | |
| A129.bin_1_CGC15 | CGCFAM_00137 | Yes | 5 | 2 | |
| A129.bin_1_CGC18 | CGCFAM_00176 | Yes | 7 | 1 | beta-glucan |
| A129.bin_1_CGC1 | CGCFAM_01533 | Yes | 4 | 1 | |
| A129.bin_1_CGC7 | CGCFAM_02348 | Yes | 4 | 1 | |
| A129.bin_1_CGC4 | CGCFAM_03020 | Yes | 4 | 1 | |
| A129.bin_1_CGC6 | CGCFAM_03021 | Yes | 3 | 1 | |
| A129.bin_1_CGC5 | CGCFAM_04283 | Yes | 7 | 1 | |
| A129.bin_1_CGC2 | CGCFAM_06600 | Yes | 6 | 1 | |
| A129.bin_1_CGC25 | CGCFAM_06601 | Yes | 3 | 1 | |
| A129.bin_1_CGC9 | CGCFAM_06602 | Yes | 12 | 4 |
Top CAZyme Families