Cluster: A129.bin_1_CGC13
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: A129.bin_1
- CGC Family ID: CGCFAM_00003
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_507 | 536961 | 538022 | - | GT4 |
| pfam | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_508 | 538048 | 539184 | - | EpsG |
| CAZyme | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_509 | 539184 | 540221 | - | GT4 |
| CAZyme | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_510 | 540252 | 541394 | - | GT4 |
| pfam | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_511 | 541384 | 542169 | - | 3Beta_HSD | Epimerase | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| TC | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_512 | 542169 | 542783 | - | 9.B.18.1.2 |
| pfam | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_513 | 542799 | 543311 | - | PglD_N |
| pfam | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_514 | 543344 | 543859 | - | KOW | NusG |
| TC | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_515 | 544290 | 546182 | - | 9.B.18.2.1 |
Gene ID: A129_contig_32_corr_1_np12_507
Type: CAZyme
Location: 536961 - 538022 (-)
Type: CAZyme
Location: 536961 - 538022 (-)
Gene ID: A129_contig_32_corr_1_np12_508
Type: pfam
Location: 538048 - 539184 (-)
Type: pfam
Location: 538048 - 539184 (-)
Gene ID: A129_contig_32_corr_1_np12_509
Type: CAZyme
Location: 539184 - 540221 (-)
Type: CAZyme
Location: 539184 - 540221 (-)
Gene ID: A129_contig_32_corr_1_np12_510
Type: CAZyme
Location: 540252 - 541394 (-)
Type: CAZyme
Location: 540252 - 541394 (-)
Gene ID: A129_contig_32_corr_1_np12_511
Type: pfam
Location: 541384 - 542169 (-)
Type: pfam
Location: 541384 - 542169 (-)
Gene ID: A129_contig_32_corr_1_np12_512
Type: TC
Location: 542169 - 542783 (-)
Type: TC
Location: 542169 - 542783 (-)
Gene ID: A129_contig_32_corr_1_np12_513
Type: pfam
Location: 542799 - 543311 (-)
Type: pfam
Location: 542799 - 543311 (-)
Gene ID: A129_contig_32_corr_1_np12_514
Type: pfam
Location: 543344 - 543859 (-)
Type: pfam
Location: 543344 - 543859 (-)
Gene ID: A129_contig_32_corr_1_np12_515
Type: TC
Location: 544290 - 546182 (-)
Type: TC
Location: 544290 - 546182 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Amedibacterium
Species
Amedibacterium intestinale
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.