Cluster: A129.bin_1_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: A129.bin_1
- CGC Family ID: CGCFAM_00137
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_767 | 791318 | 793315 | + | GH13 |
| pfam | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_768 | 793471 | 794466 | - | Transposase_31 |
| CAZyme | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_769 | 794824 | 796092 | + | GT2 |
| TF | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_770 | 796663 | 797112 | + | MarR |
| TC | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_771 | 797109 | 798506 | + | 2.A.66.1.32 |
Gene ID: A129_contig_32_corr_1_np12_767
Type: CAZyme
Location: 791318 - 793315 (+)
Type: CAZyme
Location: 791318 - 793315 (+)
Gene ID: A129_contig_32_corr_1_np12_768
Type: pfam
Location: 793471 - 794466 (-)
Type: pfam
Location: 793471 - 794466 (-)
Gene ID: A129_contig_32_corr_1_np12_769
Type: CAZyme
Location: 794824 - 796092 (+)
Type: CAZyme
Location: 794824 - 796092 (+)
Gene ID: A129_contig_32_corr_1_np12_770
Type: TF
Location: 796663 - 797112 (+)
Type: TF
Location: 796663 - 797112 (+)
Gene ID: A129_contig_32_corr_1_np12_771
Type: TC
Location: 797109 - 798506 (+)
Type: TC
Location: 797109 - 798506 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Amedibacterium
Species
Amedibacterium intestinale
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.