Cluster: A129.bin_1_CGC9
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: A129.bin_1
- CGC Family ID: CGCFAM_06602
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_251 | 262706 | 263662 | - | GT2 |
| TC | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_252 | 263675 | 265597 | - | 3.A.11.1.4 |
| TC | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_253 | 265599 | 267122 | - | 9.B.142.3.8 |
| pfam | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_254 | 267122 | 268105 | - | Acyl_transf_3 |
| pfam | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_255 | 268139 | 269251 | - | Glyphos_transf |
| CAZyme | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_256 | 269251 | 271839 | - | GT2 |
| CAZyme | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_257 | 271887 | 275390 | - | GT2 |
| pfam | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_258 | 275405 | 275791 | - | CTP_transf_like |
| TC | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_259 | 275800 | 276642 | - | 3.A.1.104.2 |
| TC | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_260 | 276656 | 277474 | - | 3.A.1.104.1 |
| pfam | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_261 | 277679 | 278104 | - | GtrA_DPMS_TM |
| CAZyme | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_262 | 278235 | 279179 | - | GT2 |
Gene ID: A129_contig_32_corr_1_np12_251
Type: CAZyme
Location: 262706 - 263662 (-)
Type: CAZyme
Location: 262706 - 263662 (-)
Gene ID: A129_contig_32_corr_1_np12_252
Type: TC
Location: 263675 - 265597 (-)
Type: TC
Location: 263675 - 265597 (-)
Gene ID: A129_contig_32_corr_1_np12_253
Type: TC
Location: 265599 - 267122 (-)
Type: TC
Location: 265599 - 267122 (-)
Gene ID: A129_contig_32_corr_1_np12_254
Type: pfam
Location: 267122 - 268105 (-)
Type: pfam
Location: 267122 - 268105 (-)
Gene ID: A129_contig_32_corr_1_np12_255
Type: pfam
Location: 268139 - 269251 (-)
Type: pfam
Location: 268139 - 269251 (-)
Gene ID: A129_contig_32_corr_1_np12_256
Type: CAZyme
Location: 269251 - 271839 (-)
Type: CAZyme
Location: 269251 - 271839 (-)
Gene ID: A129_contig_32_corr_1_np12_257
Type: CAZyme
Location: 271887 - 275390 (-)
Type: CAZyme
Location: 271887 - 275390 (-)
Gene ID: A129_contig_32_corr_1_np12_258
Type: pfam
Location: 275405 - 275791 (-)
Type: pfam
Location: 275405 - 275791 (-)
Gene ID: A129_contig_32_corr_1_np12_259
Type: TC
Location: 275800 - 276642 (-)
Type: TC
Location: 275800 - 276642 (-)
Gene ID: A129_contig_32_corr_1_np12_260
Type: TC
Location: 276656 - 277474 (-)
Type: TC
Location: 276656 - 277474 (-)
Gene ID: A129_contig_32_corr_1_np12_261
Type: pfam
Location: 277679 - 278104 (-)
Type: pfam
Location: 277679 - 278104 (-)
Gene ID: A129_contig_32_corr_1_np12_262
Type: CAZyme
Location: 278235 - 279179 (-)
Type: CAZyme
Location: 278235 - 279179 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Amedibacterium
Species
Amedibacterium intestinale
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.