Cluster: A129.bin_1_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: host glycan/beta-glucan
- Genome ID: A129.bin_1
- CGC Family ID: CGCFAM_00020
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_1001 | 1063775 | 1064257 | + | 4.A.1.1.1 |
| pfam | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_1002 | 1064273 | 1065109 | + | PRD | PRD | CAT_RBD |
| TC | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_1003 | 1065264 | 1066646 | + | 4.A.1.2.11 |
| CAZyme | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_1004 | 1066659 | 1068062 | + | GH1 |
| CAZyme | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_1005 | 1068075 | 1069511 | + | GH1 |
Gene ID: A129_contig_32_corr_1_np12_1001
Type: TC
Location: 1063775 - 1064257 (+)
Type: TC
Location: 1063775 - 1064257 (+)
Gene ID: A129_contig_32_corr_1_np12_1002
Type: pfam
Location: 1064273 - 1065109 (+)
Type: pfam
Location: 1064273 - 1065109 (+)
Gene ID: A129_contig_32_corr_1_np12_1003
Type: TC
Location: 1065264 - 1066646 (+)
Type: TC
Location: 1065264 - 1066646 (+)
Gene ID: A129_contig_32_corr_1_np12_1004
Type: CAZyme
Location: 1066659 - 1068062 (+)
Type: CAZyme
Location: 1066659 - 1068062 (+)
Gene ID: A129_contig_32_corr_1_np12_1005
Type: CAZyme
Location: 1068075 - 1069511 (+)
Type: CAZyme
Location: 1068075 - 1069511 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Amedibacterium
Species
Amedibacterium intestinale
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.