Cluster: A129.bin_1_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: A129.bin_1
- CGC Family ID: CGCFAM_00092
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_349 | 377222 | 378313 | - | 3.A.1.1.26 |
| CAZyme | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_350 | 378489 | 380669 | - | GH112 |
| TC | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_351 | 380680 | 381540 | - | 3.A.1.1.18 |
| TC | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_352 | 381553 | 382434 | - | 3.A.1.1.18 |
| pfam | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_353 | 382525 | 383856 | - | SBP_bac_1 |
| sulfatase | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_354 | 384190 | 385659 | + | S1_46 |
| CAZyme | A129_contig_32_corr_1_np12 | A129_contig_32_corr_1_np12_355 | 385734 | 387878 | - | GH112 |
Gene ID: A129_contig_32_corr_1_np12_349
Type: TC
Location: 377222 - 378313 (-)
Type: TC
Location: 377222 - 378313 (-)
Gene ID: A129_contig_32_corr_1_np12_350
Type: CAZyme
Location: 378489 - 380669 (-)
Type: CAZyme
Location: 378489 - 380669 (-)
Gene ID: A129_contig_32_corr_1_np12_351
Type: TC
Location: 380680 - 381540 (-)
Type: TC
Location: 380680 - 381540 (-)
Gene ID: A129_contig_32_corr_1_np12_352
Type: TC
Location: 381553 - 382434 (-)
Type: TC
Location: 381553 - 382434 (-)
Gene ID: A129_contig_32_corr_1_np12_353
Type: pfam
Location: 382525 - 383856 (-)
Type: pfam
Location: 382525 - 383856 (-)
Gene ID: A129_contig_32_corr_1_np12_354
Type: sulfatase
Location: 384190 - 385659 (+)
Type: sulfatase
Location: 384190 - 385659 (+)
Gene ID: A129_contig_32_corr_1_np12_355
Type: CAZyme
Location: 385734 - 387878 (-)
Type: CAZyme
Location: 385734 - 387878 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Amedibacterium
Species
Amedibacterium intestinale
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.