Cluster: A129.bin_1_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: A129.bin_1
- CGC Family ID: CGCFAM_01533
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A129_contig_246 | A129_contig_246_4 | 2805 | 3824 | + | GT2 |
| pfam | A129_contig_246 | A129_contig_246_5 | 3877 | 4464 | + | PAP2 | PAP2_3 |
| TF | A129_contig_246 | A129_contig_246_6 | 4596 | 4970 | + | GntR |
| TC | A129_contig_246 | A129_contig_246_7 | 4974 | 5834 | + | 3.A.1.149.1 |
Gene ID: A129_contig_246_4
Type: CAZyme
Location: 2805 - 3824 (+)
Type: CAZyme
Location: 2805 - 3824 (+)
Gene ID: A129_contig_246_5
Type: pfam
Location: 3877 - 4464 (+)
Type: pfam
Location: 3877 - 4464 (+)
Gene ID: A129_contig_246_6
Type: TF
Location: 4596 - 4970 (+)
Type: TF
Location: 4596 - 4970 (+)
Gene ID: A129_contig_246_7
Type: TC
Location: 4974 - 5834 (+)
Type: TC
Location: 4974 - 5834 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
Erysipelotrichales
Family
Erysipelotrichaceae
Genus
Amedibacterium
Species
Amedibacterium intestinale
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.