y
Basic Information | |
---|---|
Species | Physcomitrella patens |
Cazyme ID | Pp1s24_113V6.1 |
Family | GH35 |
Protein Properties | Length: 870 Molecular Weight: 96500.1 Isoelectric Point: 6.6974 |
Chromosome | Chromosome/Scaffold: 24 Start: 1265021 End: 1273201 |
Description | beta galactosidase 9 |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH35 | 69 | 369 | 0 |
LDGQRRMLVSGSIHYPRSTPLMWPGLIAKAKEGGLDVIQTYVFWNGHEPTRGVYNYAGRYNLPKFIRLVYEAGMYVNLRIGPYVCAEWNSGGFPAWLRFI PGIEFRTDNEPFKNETQRFVNHLVRKLKREKLFAWQGGPIIMAQIENEYGNIDASYGEAGQRYLNWIANMAVATNTSVPWIMCQQPEAPQLVINTCNGFY CDGWRPNSEDKPAFWTENWTGWFQSWGGGAPTRPVQDIAFSVARFFEKGGSFMNYYMYHGGTNFERTGVESVTTSYDYDAPIDEYGDVRQPKWGHLKDLH A |
Full Sequence |
---|
Protein Sequence Length: 870 Download |
MLSSVAIKFR HGNYKTTLGD TSQARLAASR RIMVVSRFSL CLCLVLEVLL QNHLSVAVTV 60 SYDHRALKLD GQRRMLVSGS IHYPRSTPLM WPGLIAKAKE GGLDVIQTYV FWNGHEPTRG 120 VYNYAGRYNL PKFIRLVYEA GMYVNLRIGP YVCAEWNSGG FPAWLRFIPG IEFRTDNEPF 180 KNETQRFVNH LVRKLKREKL FAWQGGPIIM AQIENEYGNI DASYGEAGQR YLNWIANMAV 240 ATNTSVPWIM CQQPEAPQLV INTCNGFYCD GWRPNSEDKP AFWTENWTGW FQSWGGGAPT 300 RPVQDIAFSV ARFFEKGGSF MNYYMYHGGT NFERTGVESV TTSYDYDAPI DEYGDVRQPK 360 WGHLKDLHAA LKLCEPALVE VDTVPTGISL GPNQEAHVYQ SSSGTCAAFL ASWDTNDSLV 420 TFQGQPYDLP AWSVSILPDC KSVVFNTAKV GAQSVIMTMQ GAVPVTNWVS YHEPLGPWGS 480 VFSTNGLLEQ IATTKDTTDY LWYMTNVQVA ESDVRNISAQ ATLVMSSLRD AAHTFVNGFY 540 TGTVNANGYE ARQPISLRPG SNNITVLSMT MGLQGYGPFL ENEKAGIQYG VRIEDLPSGT 600 IELGGSTWTY QVGLQGESKQ LFEVNGSLTA EWNTISEVSD QNFLFWIKTR FDMPAGNGSI 660 ALDLSSMGKG VVWVNGVNLG RYWSSFTAQR DGCDASCDYR GSYTQSKCLT KCNQPSQNWY 720 HIPRQWLLPK NNFIVLFEEK GGNPKDISIA TRMPQQICSH ISQSHPFPFS LTSWTKRDNL 780 TSTLLRAPLT LECAEGQQIS RICFASYGTP SGDCEGFVLS SCHANTSYDV LTKACVGRQK 840 CSVPIVSSIF GDDPCPGLSK SLAATAECS* 900 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02449 | Glyco_hydro_42 | 4.0e-7 | 82 | 237 | 176 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
pfam02140 | Gal_Lectin | 1.0e-20 | 791 | 868 | 81 | + Galactose binding lectin domain. | ||
COG1874 | LacA | 1.0e-23 | 60 | 361 | 361 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
pfam01301 | Glyco_hydro_35 | 3.0e-151 | 69 | 371 | 319 | + Glycosyl hydrolases family 35. | ||
PLN03059 | PLN03059 | 0 | 55 | 869 | 824 | + beta-galactosidase; Provisional |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001753645.1 | 0 | 58 | 869 | 33 | 877 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001756743.1 | 0 | 33 | 869 | 1 | 836 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001775275.1 | 0 | 58 | 869 | 30 | 873 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001775306.1 | 0 | 44 | 868 | 9 | 830 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002263385.1 | 0 | 38 | 869 | 8 | 872 | PREDICTED: similar to pear beta-galactosidase3 [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d3a_A | 9.94922e-44 | 69 | 386 | 17 | 345 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_D | 3.00004e-41 | 50 | 358 | 1 | 322 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_C | 3.00004e-41 | 50 | 358 | 1 | 322 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
HO778160 | 709 | 56 | 752 | 0 |
HO780602 | 611 | 110 | 708 | 0 |
HO795552 | 528 | 150 | 666 | 0 |
HO795552 | 57 | 55 | 111 | 0 |
HO780602 | 35 | 707 | 741 | 0.0003 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|